LOCUS PKU63335.1 801 aa PRT CON 21-DEC-2017
DEFINITION Dendrobium catenatum hypothetical protein protein.
ACCESSION KZ503501-31
PROTEIN_ID PKU63335.1
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1498525)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1498525)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1498525)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and the Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1498525)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, Shenzhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="fragScaff_scaffold_1680"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
protein /locus_tag="MA16_Dca013379"
/note="GO_function: GO:0005097 - Rab GTPase activator
activity [Evidence IEA]; GO_process: GO:0032313 -
regulation of Rab GTPase activity [Evidence IEA]"
/db_xref="InterPro:IPR000195"
intron_pos 57:2 (1/4)
intron_pos 92:1 (2/4)
intron_pos 151:1 (3/4)
intron_pos 760:0 (4/4)
BEGIN
1 MEIPLPDSFS IGRSSGGWSR FSSLRGVRWR FYLGILPSSP SVSIDDLRRV TADARRSYAS
61 LRRRLLIDPH IPKDGNKSPD LSMDNPLSQN PESTWGRFFR NAELEKMLEQ DLSRLYPEDD
121 HYFQTLACQT MLRRILLVWC LRHPECGYRQ GMHELLAPLV YVLHVDLNYL SQVRGLYEDH
181 FNEEFDGADC EVSSNTLMKA KSWDVGANAD DFNQIKVPNI TSFDDLDRDI RDVLLLSDSY
241 GAEGELGIVL SEKFMEHDAY CMFDGLMSGA RGVVAITEFF CSRPSMGSST GLPPIIEASS
301 ALYHLLSIVD SSLHCHLIEL GVEPQYFALR WLRVLFGREF SLSDLLVIWD ELFSALNCSC
361 TENDEYRFRI LCSPRGAFIS AMAVAMLQHV RSSLLASENA TSCLKRILNF PRNISVEKLI
421 KKARFCQVLA LETNMSVSSK AGLTKISSLA VRTGSPTSKS PIQIMPDSYW EEKWKVLQKT
481 PQNSDSVNAG QIKGLLGETL ESLRTESFTS PAKTVNMEKD AHSLDKRCLF FDDLSQIAES
541 LDDVVQRIPF CDDSPSLEED VKKCLSEEPG YESSVRTSEC MGEESLSTGN SSVFSMNTNT
601 NSESNDPEIE SEKSGVVSVF FSRENEDGNN LVKEECSNAS YNPIPKEAEA NADVAKSGPS
661 VNVEVKGVSG KVRKTAAGKF QWFWRIGKVS FNEKSMDKGA VAETLRSSNI GKESVCQEHP
721 TISASAYSNC ADSARAEVGD MKTLGTLKIL AQSMIENIQV IETVFQQEKV QAGKIFNGNE
781 QAAAIEALKE LRKISTILSE I
//