LOCUS PKU60896.1 900 aa PRT CON 21-DEC-2017
DEFINITION Dendrobium catenatum ABC transporter B family member 26,
chloroplastic protein.
ACCESSION KZ503875-57
PROTEIN_ID PKU60896.1
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and The Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, ShenZhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="original_scaffold_144855"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
protein /gene="ABCB26"
/locus_tag="MA16_Dca015440"
/note="GO_component: GO:0016021 - integral to membrane
[Evidence IEA]; GO_function: GO:0000166 - nucleotide
binding [Evidence IEA]; GO_function: GO:0005524 - ATP
binding [Evidence IEA]; GO_function: GO:0016887 - ATPase
activity [Evidence IEA]; GO_function: GO:0017111 -
nucleoside-triphosphatase activity [Evidence IEA];
GO_function: GO:0042626 - ATPase activity, coupled to
transmembrane movement of substances [Evidence IEA];
GO_process: GO:0006810 - transport [Evidence IEA];
GO_process: GO:0055085 - transmembrane transport [Evidence
IEA]"
/db_xref="InterPro:IPR001140"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR017940"
intron_pos 20:2 (1/23)
intron_pos 53:0 (2/23)
intron_pos 67:1 (3/23)
intron_pos 81:0 (4/23)
intron_pos 131:0 (5/23)
intron_pos 165:2 (6/23)
intron_pos 184:0 (7/23)
intron_pos 195:0 (8/23)
intron_pos 229:1 (9/23)
intron_pos 254:0 (10/23)
intron_pos 294:1 (11/23)
intron_pos 336:1 (12/23)
intron_pos 384:0 (13/23)
intron_pos 483:0 (14/23)
intron_pos 543:1 (15/23)
intron_pos 626:2 (16/23)
intron_pos 661:1 (17/23)
intron_pos 689:0 (18/23)
intron_pos 714:0 (19/23)
intron_pos 739:0 (20/23)
intron_pos 833:0 (21/23)
intron_pos 854:2 (22/23)
intron_pos 875:0 (23/23)
BEGIN
1 MICNARKKFR RLVADLEVVP TANRRCLESR TAVCLAEISW TEAVNMQDSK HEWIAELLLW
61 HCKYDIGRNE LDFLSWCRLN YSFFWPPYQE MALFDEETVG DLTSRLGSDC QQVSRVIGND
121 LNLICRNVVQ GTGALIALFI ISWPLALSMV LICASLATVL FFYGRFQKWV AKLTQDFAAR
181 ANEVSQETFS LIRTIQDMAR EIVGCKLATK RGIWILEFNL QLLLPFYQGR QLQKLIGRIE
241 FVDVSFHYPS RLMDKLYTYV PGKKYTKENF VGKFAERCGL RKFGLGLPAA LIFYKTLPRK
301 FHHLTLKVDG GGMDDGPDQD PMVPSSRAIV VPGLLRFDVT KGRIGSGHNQ YFVVPFGGKT
361 TRFRGLRVII TVYPAVPFGG KPSAISVLVP TVVRCTYDVS TIVIHKYSFA GDRCIHYDLL
421 EMFVEGSFTS VSYPPFTNLR WFADCTYLQG MGLLLSFAVL PSQGMGLLLS FAVFPSQSIG
481 KLHPGISPVW EKYRGAGPSH HATRACMVGV LRHRGRTNFL PTKVEQSEGA EEACEQKENY
541 LRRKAVGGAK SGSHAGAEEA MLAISTPLAK YRSRTTTKGE KERARKSGNE RKRPKAAFPM
601 LFNDARSCVV GEMSRTCVRR AAAESSMIVF TSVNIHYIFQ IRIRSLFITM AKNFQKKLTL
661 GLVFIDVEQF PAVEHIDLSI QPNKVLAIVG RSGSGKSTIA NLLLRLYEPT NGAILVDGIP
721 IEDLDIKWLR EKIGFVGQEP PLFRMDVTSN IRYGCTRETT QEEVEWAAKQ AFAHEFILSL
781 PDGYSTLVDN ALLSGGQKQR IAIARAILRD PTILILDEAT SALDAESEHY IKELLLSDRN
841 VSGEKRTVIV IAHRLSTIQA ADTIVVMDVG RIVEVGNHKQ LLHKNGLYAS LARRQSDAFV
//