LOCUS PKU60885.1 658 aa PRT CON 21-DEC-2017
DEFINITION Dendrobium catenatum Transcription factor PIF3 protein.
ACCESSION KZ503875-46
PROTEIN_ID PKU60885.1
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and The Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, ShenZhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="original_scaffold_144855"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
protein /gene="PIF3"
/locus_tag="MA16_Dca015429"
/note="GO_function: GO:0046983 - protein dimerization
activity [Evidence IEA]; GO_process: GO:0006355 -
regulation of transcription, DNA-dependent [Evidence IEA]"
/db_xref="InterPro:IPR011598"
/db_xref="InterPro:IPR024097"
/db_xref="InterPro:IPR024102"
intron_pos 46:2 (1/6)
intron_pos 397:0 (2/6)
intron_pos 431:0 (3/6)
intron_pos 453:0 (4/6)
intron_pos 475:0 (5/6)
intron_pos 634:0 (6/6)
BEGIN
1 MESNFQDLVS QIMPISEVHH TSKKGKSESA HSMKMPNYSS DLSSFMPELE LVELLWENGQ
61 IVMQGQSNRT KKSTVGTEFA FNGRVEDKFG QNGAIDSVAH DLPSTVPSSM NDQEDDAAPW
121 LNYAIDDSIQ NDYCSEFFSE LTSVHMTSLS DTNSNLYTSN KSTGCSQATK DSHIFRSSPG
181 ASDSSRSKFN NLLNMPHQCH NLSENAKPRV LEVGISSGHF GDLNSTKFQK EHVGVQKPFH
241 QSNSAGLMNF SHFSRPAALA KANLHSIDRL KSHDKSCTAA SNYPVESTVV ESRDGLKSLN
301 QPKVDSGSYG KTGVDDAEHV QSSTVVNRVS TSPNCQASSF AASMAAERTE ADKGTEAVVA
361 SSSVCSGYDA AAASNDLKHK SRKRAREVEE SGEESEDLEE ELFTVKKPSS GQAKSGKRSR
421 AAEVHNLSER RRRDRINEKM KALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQMMSMGN
481 GLFMHPMMLP AGMNFQHLRA PSISHFSPLG LGMGMGLGFG MGMIDLNGSP GLIPVPPLMH
541 GARFPCPLVP GLAGFHGMPP SSSIHSLGVP GQRPPLSVPH APLFNSQAGL FPQNPLKVSE
601 KDPSSSNNQQ QQCINSEAVE NARTKESKGE ASQAVCPLMQ KESKELHVNP VVNSNKTT
//