LOCUS PKU60877.1 451 aa PRT CON 21-DEC-2017
DEFINITION Dendrobium catenatum E3 ubiquitin-protein ligase RGLG1 protein.
ACCESSION KZ503875-38
PROTEIN_ID PKU60877.1
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and The Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, ShenZhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="original_scaffold_144855"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
protein /gene="RGLG1"
/locus_tag="MA16_Dca015421"
/note="GO_function: GO:0005515 - protein binding [Evidence
IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence
IEA]"
/db_xref="InterPro:IPR001841"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR010734"
intron_pos 95:0 (1/10)
intron_pos 123:1 (2/10)
intron_pos 170:1 (3/10)
intron_pos 208:1 (4/10)
intron_pos 241:0 (5/10)
intron_pos 267:2 (6/10)
intron_pos 303:0 (7/10)
intron_pos 345:2 (8/10)
intron_pos 406:0 (9/10)
intron_pos 426:0 (10/10)
BEGIN
1 MGGRGSKEEV RRSFRSADSF RSRGYAEEQY STPRYGGDVP AYQNYPTSTS SYDPPHATGY
61 SQPYSVPQPP ATRQTRKLDR RYSQISDNYN SLEQVTEALA RAGLESSNLI VGIDFTKSNE
121 WTGKFSFHNR SLHHISDIPN PYEHAISIIG QTLSAFDEDN LIPCYGFGDA STHDQDVFSF
181 FPDERPCTGF SEALSRYKEI VPHLRLAGPT SFAPIIEKAM TIVEQSGGQY HVLLIIADGQ
241 VTRSVDTQSG YLSSQEQKTV DSIVKASEFP LSIVLVGVGD GPWDMMKEFD DNIPARSFDN
301 FQFVNFTEIM SKNTHQKRKE TEFALAALME IPSQYKATIE LGILGKSARS PQRIALPPPD
361 GSRAAAAFGS KSFQSTSFQK SSTPYTGYDS PTSYAPSASS ASWEQASCPI CLTNPKNLAF
421 GCGHQTCYDC GQSLLTCPIC RSEIVTRIRL Y
//