LOCUS PKU60873.1 864 aa PRT CON 21-DEC-2017
DEFINITION Dendrobium catenatum putative mitochondrial protein ymf40 protein.
ACCESSION KZ503875-34
PROTEIN_ID PKU60873.1
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and The Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, ShenZhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="original_scaffold_144855"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
protein /gene="YMF40"
/locus_tag="MA16_Dca015417"
/note="GO_function: GO:0003723 - RNA binding [Evidence
IEA]; GO_function: GO:0003964 - RNA-directed DNA
polymerase activity [Evidence IEA]; GO_process: GO:0006278
- RNA-dependent DNA replication [Evidence IEA];
GO_process: GO:0006397 - mRNA processing [Evidence IEA]"
/db_xref="InterPro:IPR000477"
/db_xref="InterPro:IPR024937"
intron_pos 121:1 (1/1)
BEGIN
1 MSDRRNGGED ESSRGELDKL IPRNRGPRDH EEEEEEEDGI QCEKTKLLLE ISENQRKESD
61 EEKQKQVSFH GNQKKVRSKV KRILLTPFRQ FNKHREGKKK KAADRRCCKA PFPYDGEDFG
121 GLGFRRILHS KISPFVFFQI ARSVSGNRAS KPSPDIESLV LRQYRDGKFR DLFRAAISEP
181 SFLLSACQNL CLEEIPPSAD SINRFISIED IAFDLREGRL DVESLCVKLL PSRKKGTHLV
241 LPNLKLKVVI EAVRMALEII YEKRFATFAY GGRVGKGRHT AVRYLKAAVE NPNWWFRVPF
301 RRQALDLCRL KAALAEKIED DALIGFIERL FTSEAVVIEL GGLDLGRGFP QESSLNSILV
361 NIYFDGLDQE IQEIRAQIHR GNPKLRNLEK AENSLVFHKP VRVYAVRYLD EALIVTSGSK
421 LLTIDIKNRI FKYVEGNMNL KVDKLKAHIH SAVSEKMDFL GMELQAVSPL VLHPPLSEKA
481 MRAKKKHLKQ KAAKALELKN ARETIRKKLG LKIMKHVFKK LKRVGGFKID LPVEGEVREL
541 FRTWAEEVVV EYLKSKEDCY HWHKMLTYGN FLSLKRVRDQ LPESLVDAYD QFQEKLNKHL
601 MPERASKHVE DNEMVEKDEE KRYAKRTVED LIELCMRVNA PIELVRRAIK LAGFTNSMGR
661 PRPIKLLICL DDSDIIKWYA GVARSWLDFY CCCRNFKMVK TVVSYHLRFS CLLTLAEKHE
721 STKSQAIQHY TKDLRIIGEN GMEEVYFATE KEIKMLGDRN LSDPKPVDGA ITMVLVRLAI
781 DEHSPVCLAH FCESTNNTIY RVRLLQNRLN VDPLKEDKWV PGMGAIHEAL NRKCLPLCSK
841 HATNLFIGNI CLQDIDCTSF LNAD
//