LOCUS PKU60864.1 604 aa PRT CON 21-DEC-2017
DEFINITION Dendrobium catenatum putative phenylalanine--tRNA ligase
beta subunit protein.
ACCESSION KZ503875-25
PROTEIN_ID PKU60864.1
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and The Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, ShenZhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="original_scaffold_144855"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
protein /locus_tag="MA16_Dca015408"
/note="GO_function: GO:0000287 - magnesium ion binding
[Evidence IEA]; GO_function: GO:0003723 - RNA binding
[Evidence IEA]; GO_function: GO:0004826 -
phenylalanine-tRNA ligase activity [Evidence IEA];
GO_function: GO:0005524 - ATP binding [Evidence IEA];
GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
[Evidence IEA]"
/db_xref="InterPro:IPR005146"
/db_xref="InterPro:IPR005147"
intron_pos 20:1 (1/18)
intron_pos 39:0 (2/18)
intron_pos 73:2 (3/18)
intron_pos 117:0 (4/18)
intron_pos 155:2 (5/18)
intron_pos 178:0 (6/18)
intron_pos 192:0 (7/18)
intron_pos 206:0 (8/18)
intron_pos 231:2 (9/18)
intron_pos 274:0 (10/18)
intron_pos 343:0 (11/18)
intron_pos 385:0 (12/18)
intron_pos 420:0 (13/18)
intron_pos 465:0 (14/18)
intron_pos 490:0 (15/18)
intron_pos 526:0 (16/18)
intron_pos 555:0 (17/18)
intron_pos 583:0 (18/18)
BEGIN
1 MPTVSVGRDC LFQALGRSYT QEEFEELCFE FGIELDDVTT EKEIIRKEKH LETEVGGEDE
61 EEVIYKIEVA ANRYDLLCLE GIARALRIFI GKEEIPIYKF REIPRESMLQ INVSKATSQI
121 RPYVVGAVLR GVSFNRANYN SFIDLQDKLH QNICRKRTRV AIGTHDLDTI DTPFSYEALI
181 PQDITFIPLK QVKSFRADEL LEFYKSDLKL KKFLHIIENS PVYPVIYDRN RTVLSLPPII
241 NSAHSALSLR TKNVFIECTA TDLTKAKIVL NTMVTMFSEY CDSKFEVEPV EVVYPDDRQF
301 EDCTSEGIFK GKNIYPDLAV TVMDIPLSVI TCPIGVTLGV AEVIPLLNKM QLHAKEKLVT
361 GNNVITVHVP PTRSDILHPC DVMEDVAIAY GYDKIPRTKP KCIGGQQPLN VFSDKIRGEV
421 SSAGYMEVLT WLLCSHEENF AMVKRKDDGA KAVTIENPRS SEFEVVRTSL LPGLLKTLKH
481 NIDHRRPIKI FEVGDVVCLD GTRDVGASNN RRLAALYCNV TSGFEEILGL VMRIMQVVRK
541 PHEPANDNFI RPSNEPEFFP NRQCYIIFKD KQIGAFGVVH PEVLEKFGIP DPCSFVEIDI
601 QALL
//