LOCUS PKU60855.1 865 aa PRT CON 21-DEC-2017
DEFINITION Dendrobium catenatum Anaphase-promoting complex subunit 2 protein.
ACCESSION KZ503875-16
PROTEIN_ID PKU60855.1
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and The Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, ShenZhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="original_scaffold_144855"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
protein /gene="APC2"
/locus_tag="MA16_Dca015399"
/note="GO_component: GO:0031461 - cullin-RING ubiquitin
ligase complex [Evidence IEA]; GO_function: GO:0031625 -
ubiquitin protein ligase binding [Evidence IEA];
GO_process: GO:0006511 - ubiquitin-dependent protein
catabolic process [Evidence IEA]"
/db_xref="InterPro:IPR001373"
/db_xref="InterPro:IPR014786"
/db_xref="InterPro:IPR016158"
intron_pos 72:0 (1/15)
intron_pos 101:0 (2/15)
intron_pos 178:1 (3/15)
intron_pos 271:0 (4/15)
intron_pos 295:0 (5/15)
intron_pos 374:2 (6/15)
intron_pos 513:2 (7/15)
intron_pos 581:0 (8/15)
intron_pos 619:1 (9/15)
intron_pos 646:0 (10/15)
intron_pos 686:0 (11/15)
intron_pos 715:2 (12/15)
intron_pos 743:0 (13/15)
intron_pos 803:0 (14/15)
intron_pos 826:0 (15/15)
BEGIN
1 MLVDPTILDS LSEQTIGEIL QSWIAFVSCT EILLGGSGDL SAASELASSV TILCRNGLRS
61 LLEDHFLQYL EDTFMARAVL KFWRHFDKYS DVLRLDLQNQ ILVDQLHEEL CSSLEEMCSE
121 KNYQEKCLVM LIHALQLYEE SIATGKINSG HYESNLLSRY QLMVSSVLLT TLPSHFPEVL
181 RLYFKHKLEE LNTMIAVNYK DGMESLNNDR NLKYNVPDEM NIDGSHPESA VSKNYTLVKC
241 IGKVVLDLRN LGFTALTEDA YASSIIQLLK AKVQNLAVDD YRTPVLQSIK EWIQAVPLQF
301 LHALLCYLGD SFDNDVSSGP ISPLASRPLS YPGIDAPSEG LVRWQLRLEY FAYEKLQDLR
361 IGKLFEIIVD YPDSSPAIED LKQCLEYTGQ HSKLVDSFIS SLRYRLLTAG ASTNDILHQY
421 VSTIKALRTI GPTGVFLEAV GEPIRDYLRG RKDTIKCIVT MLTDGSGINP SGMGNTGDSL
481 LEELNREAEN QETADTDDDI NVDDKQAWIN AERWEPDPIE ADPLRGSRQR GKIDILEMLV
541 SIIGSKDQLV NEYRVMLAEK LLNKSDYDID SEIRTLELLK IHFGESSMQK CEIMVNDLIS
601 SKRMNANIKA SKSQLAMNGS EQGESMSLDL VDATIISSNF WPPIQEESLH LPLPVQQLLS
661 DYAERFHEIK TPRKLLWKKY LGIVKLELHF DDRNVEFSVT PLHAAIIMQF QEKTSWASKS
721 LAAAVGLPVD ILNRRMSFWM SKGVITDTGG ADSSERVFTL VDDLTDTNRN GISNETEGMD
781 EEGESSVASV EEQLQKEMTI YQKFIEGMLT NFGGMPLDRI HNTLKMFCVA EPTYDKSLQE
841 LQSFLSVLRA EEKLDLRDGH YYLKK
//