LOCUS PKU60847.1 952 aa PRT CON 21-DEC-2017
DEFINITION Dendrobium catenatum hypothetical protein protein.
ACCESSION KZ503875-8
PROTEIN_ID PKU60847.1
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1278363)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and The Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1278363)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, ShenZhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="original_scaffold_144855"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
protein /locus_tag="MA16_Dca015391"
/note="GO_component: GO:0016021 - integral to membrane
[Evidence IEA]; GO_function: GO:0004348 -
glucosylceramidase activity [Evidence IEA]; GO_process:
GO:0006665 - sphingolipid metabolic process [Evidence
IEA]"
/db_xref="InterPro:IPR006775"
/db_xref="InterPro:IPR024462"
intron_pos 25:0 (1/18)
intron_pos 62:0 (2/18)
intron_pos 81:0 (3/18)
intron_pos 104:2 (4/18)
intron_pos 138:0 (5/18)
intron_pos 161:2 (6/18)
intron_pos 195:1 (7/18)
intron_pos 230:0 (8/18)
intron_pos 248:0 (9/18)
intron_pos 266:2 (10/18)
intron_pos 279:2 (11/18)
intron_pos 328:0 (12/18)
intron_pos 388:2 (13/18)
intron_pos 411:1 (14/18)
intron_pos 435:2 (15/18)
intron_pos 456:1 (16/18)
intron_pos 763:2 (17/18)
intron_pos 860:2 (18/18)
BEGIN
1 MFMNGFEKNE TDYSEAVEVV DTTTVKMDPG NPPQLAWQRK LTDEGKGITE FTLTMMEKLH
61 LGPMVLKLCH SYITETLKGR SASYNPFKKW EAASSLGVPL GGIGAGSIGR SYKGYFQNWQ
121 LFPEVCEESP VLANQFSVFI SRPGGKRYSS VLSPRNAQIP RGSRNPGIES WDWNLSGEKS
181 TYHALYPRSW TVYDGEPDPD LKITCRQISP VIPHNYQQSS YPVAVFTFTL FNSGKTPAEI
241 TLLFTWANSV GGSSEVSGNH SNSRIILQDG IRGVLLHHRT ANERPPVTFA IGCQETPDVH
301 VSECPYFIIS GNAQGFTASD MWEEIIKHGS FDELNGNETP NPSDPGSSIG AAVAASVTVP
361 AQAVRSVTFA LSWACPQVKF INGRTHHRRY TRFYGSSEDA AANLVHDAII DHGNWEAQIE
421 DWQTPILQDK SLPSWYPTTL FNQLYFLNAG GAIWTDGLPS ILNLVSIEER KFHLDPSSLN
481 KKIKTDNIVN NTATSILTNM ASLFEGVQSP MVSKAALGTS LLLEGEENVG QFLYLEGSEY
541 HMFNTYDVHF YSSFSLLMLF PKLELSIQRD FAMAVLMHDP EKIKPIHGHK KVPRKVFGAV
601 PHDIGQNDPW FETNSYNLHD PNKWKDLNPK FVLQVYRDVV ATGDKSFAHA VWPSVYIAMA
661 YMDQFDKDGD GMIENDGGPD QTYDMWSAYG VSAYTGGLWV AALQAASVLA RLVGDEASED
721 YFWNRYLKAK SVYSKLWNGS YFNYDSSGYQ NSAIQADQLA GHWFAKASGL QPIVDEEKAR
781 SALAKIYEFN VLKVMNGKMG AINGIKPNGE IGSLGLQARE IWSGITFAVA ATMIQEGMTE
841 QAFKTAQGIH EAAWSSEGFG YAFRIPEALN VKGEYRSLNY MRPLAIWAMQ WALHPPKLLE
901 LEPRPDNKQI DPSLSNKEFS KIASLLKFPE EKPTPTLLSV FLDIIHELVR RH
//