LOCUS PKA58876.1 1268 aa PRT CON 06-DEC-2017 DEFINITION Apostasia shenzhenica Regulator of nonsense transcripts 1 like protein. ACCESSION KZ451950-178 PROTEIN_ID PKA58876.1 SOURCE Apostasia shenzhenica ORGANISM Apostasia shenzhenica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae; Apostasioideae; Apostasia. REFERENCE 1 (bases 1 to 11362482) AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C., Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S., Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L., Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y., Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J., Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and Liu,Z.J. TITLE The Apostasia genome and the evolution of orchids JOURNAL Nature 549 (7672), 379-383 (2017) PUBMED 28902843 REFERENCE 2 (bases 1 to 11362482) AUTHORS Liu,Z.-J. TITLE Direct Submission JOURNAL Submitted (25-OCT-2017) Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China, Wangtong Road, Shenzhen 518114, China COMMENT ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 49292; Pbjelly v. 14.1; fragscaff v. 140324 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 455.49x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Apostasia shenzhenica" /mol_type="genomic DNA" /submitter_seqid="fragScaff_scaffold_67" /isolate="ASH160606" /db_xref="taxon:1088818" /chromosome="Unknown" /tissue_type="stem; leaf" /ecotype="Shenzhen" /country="China: Shenzhen" protein /gene="UPF1" /locus_tag="AXF42_Ash000969" /EC_number="3.6.4.-" /note="GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR018999" intron_pos 179:0 (1/28) intron_pos 263:0 (2/28) intron_pos 320:0 (3/28) intron_pos 337:0 (4/28) intron_pos 368:0 (5/28) intron_pos 400:0 (6/28) intron_pos 417:0 (7/28) intron_pos 456:2 (8/28) intron_pos 493:0 (9/28) intron_pos 534:0 (10/28) intron_pos 558:0 (11/28) intron_pos 582:0 (12/28) intron_pos 604:1 (13/28) intron_pos 652:0 (14/28) intron_pos 676:0 (15/28) intron_pos 719:0 (16/28) intron_pos 771:0 (17/28) intron_pos 809:0 (18/28) intron_pos 842:0 (19/28) intron_pos 868:0 (20/28) intron_pos 913:0 (21/28) intron_pos 938:0 (22/28) intron_pos 977:1 (23/28) intron_pos 1103:0 (24/28) intron_pos 1124:0 (25/28) intron_pos 1147:0 (26/28) intron_pos 1190:0 (27/28) intron_pos 1229:0 (28/28) BEGIN 1 MTSQSVVNNL YDTASQPDTS GDAYTFLEFN TQGDDFDYPE FHELSQPSRS PTWPTPAAAD 61 SLADPGVGLQ SADPSGSTSS SPSAVGTTAG LASAGKARLA AASPAVDALA AGLSGLNFEE 121 TGEDENYEFG KGDFTEHACR YCGVQNPACV VRCNMPSCRK WFCNSRGNTS GSHIVNHLVR 181 AKHKEVCLHK DSPLGETILE CYNCGCRNVF LLGFISAKTE SVVVLLCREP CLSVNALKDM 241 NWDLSQWCPL IDDRCFLPWL VKVPSEQEQL RARQVTAQQI NKVEELWKTN PDASLEDLEK 301 PGVDDEPQPV ALKYEDAYQY QNVFAPLIKL EADYDKMMKE SQSKDNVTIR WDVGLNKKRI 361 AYFVFPKEDN ELRLVPGDEL RLRYSGDAAH PAWQSVGHVI KLTAQEEVAL ELRASQGVPI 421 DLNHGFSVDF VWKSTSFDRM QGAMKNFAVD ETSVSGYIYH HLLGHEVELQ IVRNTLPRRF 481 GAPGLPELNA SQVFAVKSVL QKPISLIQGP PGTGKTVTSA AIVYHMAKQG QGQVLVCAPS 541 NVAVDQLAEK ISSTGLKVVR LCAKSREAVS SPVEHLTLHY QVRHLDTSEK SELHKLQQLK 601 DEQGELSSSD EKKFKALKRA TEREILQSAD VICCTCVGAG DPRLANFRFR QVLIDESTQA 661 TEPECLIPLV LGVKQVVLVG DHCQLGPVIM CKKAARAGLA QSLFERLVLL GLKPFRLQVQ 721 YRMHPSLSEF PSNSFYEGTL QNGVTINERQ SLGIDFPWPV PNRPMFFYVQ MGQEEISASG 781 TSYLNRTEAA NVEKIVTTFL RSGVVPSQIG VITPYEGQRA YIVNYMSRNG SLRQQLYKEI 841 EVASVDSFQG REKDFIILSC VRSNEHQGIG FLNDPRRLNV ALTRARYGIV ILGNPKVLSK 901 QPLWNCLLTH YKERECLVEG PLNNLKQSMV QFQKPKKMYN DRRLFFGAGP GFVPGDSFAP 961 GSSSCPIADK RGGRLKGHSY MPFAPPNGTH KPGVQPAGYP LSRIPLPPFP GGPHSQSYAI 1021 PPRGAVHGPI GAMPQVLQPG NRGFGAGRGN AGGPIGGHLT HQHNSQQALS NFGSGFSFPA 1081 MENPNSQPSI GGPLSQTGLM TQAPVQGLSQ TFRDGFSIGG MSQDYGDDFK SQGSHVAYNM 1141 ADFSTQASQS GYPVDFVGQG HQGGFPSYLN QNTQPGYSHL GASNDFISQD YMQHGSQGLF 1201 TQAGFNNPSQ DDSSQSHFIG GPSPLQSQGL MNPVYSQPFN QYNSQPLNMQ PPQQQSQSSP 1261 NQKHHYNG //