LOCUS       PKA58876.1              1268 aa    PRT              CON 06-DEC-2017
DEFINITION  Apostasia shenzhenica Regulator of nonsense transcripts
            1 like protein.
ACCESSION   KZ451950-178
PROTEIN_ID  PKA58876.1
SOURCE      Apostasia shenzhenica
  ORGANISM  Apostasia shenzhenica
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
            Apostasioideae; Apostasia.
REFERENCE   1  (bases 1 to 11362482)
  AUTHORS   Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
            Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
            Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
            Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
            Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
            Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
            Liu,Z.J.
  TITLE     The Apostasia genome and the evolution of orchids
  JOURNAL   Nature 549 (7672), 379-383 (2017)
   PUBMED   28902843
REFERENCE   2  (bases 1 to 11362482)
  AUTHORS   Liu,Z.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2017) Shenzhen Key Laboratory for Orchid
            Conservation and Utilization, The National Orchid Conservation
            Center of China, Wangtong Road, Shenzhen 518114, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method        :: AllPaths v. 49292; Pbjelly v. 14.1;
                                      fragscaff v. 140324
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 455.49x
            Sequencing Technology  :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /organism="Apostasia shenzhenica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="fragScaff_scaffold_67"
                     /isolate="ASH160606"
                     /db_xref="taxon:1088818"
                     /chromosome="Unknown"
                     /tissue_type="stem; leaf"
                     /ecotype="Shenzhen"
                     /country="China: Shenzhen"
     protein         /gene="UPF1"
                     /locus_tag="AXF42_Ash000969"
                     /EC_number="3.6.4.-"
                     /note="GO_component: GO:0005737 - cytoplasm [Evidence
                     IEA]; GO_function: GO:0003677 - DNA binding [Evidence
                     IEA]; GO_function: GO:0004386 - helicase activity
                     [Evidence IEA]; GO_function: GO:0005524 - ATP binding
                     [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding
                     [Evidence IEA]; GO_process: GO:0000184 -
                     nuclear-transcribed mRNA catabolic process,
                     nonsense-mediated decay [Evidence IEA]"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR018999"
     intron_pos      179:0 (1/28)
     intron_pos      263:0 (2/28)
     intron_pos      320:0 (3/28)
     intron_pos      337:0 (4/28)
     intron_pos      368:0 (5/28)
     intron_pos      400:0 (6/28)
     intron_pos      417:0 (7/28)
     intron_pos      456:2 (8/28)
     intron_pos      493:0 (9/28)
     intron_pos      534:0 (10/28)
     intron_pos      558:0 (11/28)
     intron_pos      582:0 (12/28)
     intron_pos      604:1 (13/28)
     intron_pos      652:0 (14/28)
     intron_pos      676:0 (15/28)
     intron_pos      719:0 (16/28)
     intron_pos      771:0 (17/28)
     intron_pos      809:0 (18/28)
     intron_pos      842:0 (19/28)
     intron_pos      868:0 (20/28)
     intron_pos      913:0 (21/28)
     intron_pos      938:0 (22/28)
     intron_pos      977:1 (23/28)
     intron_pos      1103:0 (24/28)
     intron_pos      1124:0 (25/28)
     intron_pos      1147:0 (26/28)
     intron_pos      1190:0 (27/28)
     intron_pos      1229:0 (28/28)
BEGIN
        1 MTSQSVVNNL YDTASQPDTS GDAYTFLEFN TQGDDFDYPE FHELSQPSRS PTWPTPAAAD
       61 SLADPGVGLQ SADPSGSTSS SPSAVGTTAG LASAGKARLA AASPAVDALA AGLSGLNFEE
      121 TGEDENYEFG KGDFTEHACR YCGVQNPACV VRCNMPSCRK WFCNSRGNTS GSHIVNHLVR
      181 AKHKEVCLHK DSPLGETILE CYNCGCRNVF LLGFISAKTE SVVVLLCREP CLSVNALKDM
      241 NWDLSQWCPL IDDRCFLPWL VKVPSEQEQL RARQVTAQQI NKVEELWKTN PDASLEDLEK
      301 PGVDDEPQPV ALKYEDAYQY QNVFAPLIKL EADYDKMMKE SQSKDNVTIR WDVGLNKKRI
      361 AYFVFPKEDN ELRLVPGDEL RLRYSGDAAH PAWQSVGHVI KLTAQEEVAL ELRASQGVPI
      421 DLNHGFSVDF VWKSTSFDRM QGAMKNFAVD ETSVSGYIYH HLLGHEVELQ IVRNTLPRRF
      481 GAPGLPELNA SQVFAVKSVL QKPISLIQGP PGTGKTVTSA AIVYHMAKQG QGQVLVCAPS
      541 NVAVDQLAEK ISSTGLKVVR LCAKSREAVS SPVEHLTLHY QVRHLDTSEK SELHKLQQLK
      601 DEQGELSSSD EKKFKALKRA TEREILQSAD VICCTCVGAG DPRLANFRFR QVLIDESTQA
      661 TEPECLIPLV LGVKQVVLVG DHCQLGPVIM CKKAARAGLA QSLFERLVLL GLKPFRLQVQ
      721 YRMHPSLSEF PSNSFYEGTL QNGVTINERQ SLGIDFPWPV PNRPMFFYVQ MGQEEISASG
      781 TSYLNRTEAA NVEKIVTTFL RSGVVPSQIG VITPYEGQRA YIVNYMSRNG SLRQQLYKEI
      841 EVASVDSFQG REKDFIILSC VRSNEHQGIG FLNDPRRLNV ALTRARYGIV ILGNPKVLSK
      901 QPLWNCLLTH YKERECLVEG PLNNLKQSMV QFQKPKKMYN DRRLFFGAGP GFVPGDSFAP
      961 GSSSCPIADK RGGRLKGHSY MPFAPPNGTH KPGVQPAGYP LSRIPLPPFP GGPHSQSYAI
     1021 PPRGAVHGPI GAMPQVLQPG NRGFGAGRGN AGGPIGGHLT HQHNSQQALS NFGSGFSFPA
     1081 MENPNSQPSI GGPLSQTGLM TQAPVQGLSQ TFRDGFSIGG MSQDYGDDFK SQGSHVAYNM
     1141 ADFSTQASQS GYPVDFVGQG HQGGFPSYLN QNTQPGYSHL GASNDFISQD YMQHGSQGLF
     1201 TQAGFNNPSQ DDSSQSHFIG GPSPLQSQGL MNPVYSQPFN QYNSQPLNMQ PPQQQSQSSP
     1261 NQKHHYNG
//