LOCUS EOA29112.1 1560 aa PRT CON 21-MAR-2015
DEFINITION Capsella rubella hypothetical protein protein.
ACCESSION KB870808-1910
PROTEIN_ID EOA29112.1
SOURCE Capsella rubella
ORGANISM Capsella rubella
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Capsella.
REFERENCE 1 (bases 1 to 14994381)
AUTHORS Schmutz,J., Prochnik,S., Nordborg,M., Weigel,D., Rokhsar,D. and
Wright,S.
TITLE Genome sequencing of Capsella rubella
JOURNAL Nat. Genet. (2013) In press
REFERENCE 2 (bases 1 to 14994381)
AUTHORS Schmutz,J., Prochnik,S., Nordborg,M., Weigel,D., Rokhsar,D. and
Wright,S.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (01-APR-2013) US DOE Joint Genome Institute, Mitchell
Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: ARACHNE v. 20071016_modified
Assembly Name :: Caprub1_0
Genome Coverage :: 22.35X
Sequencing Technology :: ABI 3739; Roche 454FLX
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Capsella rubella"
/mol_type="genomic DNA"
/submitter_seqid="scaffold_4"
/cultivar="Monte Gargano"
/bio_material="ABRC:CS22697"
/db_xref="taxon:81985"
/chromosome="Unknown"
protein /locus_tag="CARUB_v10025379mg"
/note="encoded by transcript CARUB_v10025379m"
/db_xref="Phytozome:Carubv10025379m.p"
intron_pos 25:2 (1/20)
intron_pos 76:2 (2/20)
intron_pos 118:1 (3/20)
intron_pos 159:1 (4/20)
intron_pos 548:1 (5/20)
intron_pos 675:1 (6/20)
intron_pos 705:2 (7/20)
intron_pos 1082:0 (8/20)
intron_pos 1117:2 (9/20)
intron_pos 1146:0 (10/20)
intron_pos 1176:2 (11/20)
intron_pos 1199:2 (12/20)
intron_pos 1212:0 (13/20)
intron_pos 1239:2 (14/20)
intron_pos 1381:2 (15/20)
intron_pos 1394:0 (16/20)
intron_pos 1413:1 (17/20)
intron_pos 1460:0 (18/20)
intron_pos 1482:0 (19/20)
intron_pos 1520:1 (20/20)
BEGIN
1 MVSPMDSIYP CMVEERSPRK QVEERPNYFS GHTSWASNAS ETTRAYDSGL MISDEISPIY
61 PNTVEEQAHW NQLEQRSLDM SGLEQLSFGD FLALSNNAPV YCSGQTIPWA SNALETTRNS
121 EIMQQRNEAV NCLSTVSNNV TSVSFSGQTH LVSEPTTTRY TEMMKKGNEA VEILSSVSNN
181 VAEEIINNVA EEIIKTPEKP KRKKHRPKVV KEAKPKRAPK LPTPRKSVVA HGQESKTPRR
241 KYVRKKVEVN MDQESTPVEP PPVVETLTHA KKLCRRVLDF ELENGENQSN SDTKQEDETE
301 SAPREKLLGS INQELKDFLR SSPSTPKRKR SQCKRKGTEP NKNGGSQEGV DRSVAQAAKR
361 RQAKEPTFGD LNPPRFQYDE VCDYQNMHWL YIRNLQQEGI RSEPICSTSF AGQKHKDVSA
421 FDSNCYSFTS QPIADRVLTI EEKREGIFQG RQQFEFNVLS DKIDTPMKTR TTGHVRLRNL
481 SSMDKNMEVA EQLPSGYHSN SQQNNNNILV DKRVTVSKKK RITKSKKSQA NQKTHLPSHC
541 HFPASFSGLS QDELWKQPNL VEAITEQLRI LDINRESCET AIVPYSSKNQ GNQLVLFRGG
601 GGAIVPVTPV KRRRPRPKVD LDDETEKVWK LLLENINSEG IDGSDEQKAK WWEEERNVFR
661 GRADSFIARM HLVQGDRRFT PWKGSVVDSV VGVFLTQNVS DHLSSSAFMS LAAEFPVPAA
721 TSTNFDFGTR SMPSIQITYL DSEESMSSPP DHNQSSVTLK NIDPDEENGY VHSNETSRSS
781 SEFASSSHES DGKTTYSKMY VESDRKGLSV EVAKIDQECL TLNLFPSEDS ALTCQRSMVS
841 DAPQNTEKAG SSEINLEGEY RTSYLKLLLG VQVSLEESNQ KSQYENSRQE VGVSSNPSSL
901 QVSPNMSPGD CFSEVTDFQS LKRPTKSSDD SYEPSCSYQQ DGDVLSSRKP VMPESCSKKH
961 KGSFQIPDLN ESTSCLDVIE DTEKPPDPYS RPLRDSSCKE LNPIDDVTLN ANGKKVQKQK
1021 KEAFDWDSLR REAEGREGKR KKSTRTMDSV DWEAIRTADV SEVAETIKKR GMNHMLAERI
1081 QLTMNMKVMQ GFLDRLVNKH GSIDLEWLRD IPPDKAKEYL LSFRGLGLKS VECVRLLTLH
1141 HLAFPVDTNV ARIAVRLGWV PLQPLPESLQ LHLLEMYPIL ESIQKYLWPR LCKLDQKTLY
1201 ELHYQMITFG KVFCTKSKPN CNACPMRGEC RHFASAFASA RLALPGTEKG MGTPDKNPLP
1261 LHLPEPLHRE QGSEVVKHSE PVKKVKFCEP IIEEPASPEP ESAQVSIADI EDAFFEDPEE
1321 IPTIRLNTDA LTSNLKKIME HNKELQVGNI STALVALTAE AASLPMPKLK NISRLRTEHQ
1381 VYEIPDSHPL LVELEKREPD DPCSYLLAIW TPGETADSIQ PAVSKCISQA NGKLCDEETC
1441 FSCNNIKEAR SQTVRGTILI PCRTAMRGSF PLNGTYFQVN EVFADHASSL NPIDVPREWL
1501 WDLPRRTVYF GTSIPTIFKG YVCVRGFERK TRGPKPLIAR LHFPVSKMKS RANPPNQSAV
//