LOCUS EOA28958.1 2965 aa PRT CON 21-MAR-2015
DEFINITION Capsella rubella hypothetical protein protein.
ACCESSION KB870808-2952
PROTEIN_ID EOA28958.1
SOURCE Capsella rubella
ORGANISM Capsella rubella
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Capsella.
REFERENCE 1 (bases 1 to 14994381)
AUTHORS Schmutz,J., Prochnik,S., Nordborg,M., Weigel,D., Rokhsar,D. and
Wright,S.
TITLE Genome sequencing of Capsella rubella
JOURNAL Nat. Genet. (2013) In press
REFERENCE 2 (bases 1 to 14994381)
AUTHORS Schmutz,J., Prochnik,S., Nordborg,M., Weigel,D., Rokhsar,D. and
Wright,S.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (01-APR-2013) US DOE Joint Genome Institute, Mitchell
Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: ARACHNE v. 20071016_modified
Assembly Name :: Caprub1_0
Genome Coverage :: 22.35X
Sequencing Technology :: ABI 3739; Roche 454FLX
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Capsella rubella"
/mol_type="genomic DNA"
/submitter_seqid="scaffold_4"
/cultivar="Monte Gargano"
/bio_material="ABRC:CS22697"
/db_xref="taxon:81985"
/chromosome="Unknown"
protein /locus_tag="CARUB_v10025209mg"
/note="encoded by transcript CARUB_v10025209m"
/db_xref="Phytozome:Carubv10025209m.p"
intron_pos 669:1 (1/30)
intron_pos 931:0 (2/30)
intron_pos 1178:0 (3/30)
intron_pos 1223:0 (4/30)
intron_pos 1258:0 (5/30)
intron_pos 1296:0 (6/30)
intron_pos 1321:2 (7/30)
intron_pos 1349:0 (8/30)
intron_pos 1457:0 (9/30)
intron_pos 1656:2 (10/30)
intron_pos 1685:0 (11/30)
intron_pos 1750:0 (12/30)
intron_pos 1933:0 (13/30)
intron_pos 1981:0 (14/30)
intron_pos 2141:0 (15/30)
intron_pos 2188:2 (16/30)
intron_pos 2212:0 (17/30)
intron_pos 2240:0 (18/30)
intron_pos 2259:0 (19/30)
intron_pos 2282:0 (20/30)
intron_pos 2311:0 (21/30)
intron_pos 2350:0 (22/30)
intron_pos 2400:0 (23/30)
intron_pos 2428:1 (24/30)
intron_pos 2468:2 (25/30)
intron_pos 2501:0 (26/30)
intron_pos 2539:0 (27/30)
intron_pos 2662:1 (28/30)
intron_pos 2910:0 (29/30)
intron_pos 2951:0 (30/30)
BEGIN
1 MEEDDERKLP EADVTDKPDI ANPLQSRIEA FDIGDSSFIA KDDTALQGIS SADRVFKDDD
61 FEQVSLGDQE KAVNESQGDL MEPGSTSNSD IGRSSFGATE GLTYHLSGTQ EMYDLMPIDD
121 VQSDRLSSAG PEKETPDSLQ QSLSEPSPDS LHHLESGYSP VHSPQKPKPK ATVPNVSPEL
181 LHLVDSAIMG KPESLDKLKN VVSGIENFGA GEESEATAFL VIDSLIATMG GVESFEEDED
241 SNPPSVMLNS RAAIVSGELI PWLPGLGDSV NFMSPRTRMV RGLLVILRSC TRNRAMCSTA
301 GLLGVLLRSV EEIISKDVDM KWNAAAVLLL CIQHLAGHSL SVDDLHRWLQ LIKTAIATAW
361 SSPLMLALEK TMTGKESRGP ACTFEFDGES SGLLGPGESR WPFTNGYAFA TWIYIESFAD
421 TLNAATAAAA IAAAAAAKSG KTSAMSAAAA ASALAGEGTA HMPRLFSFLS ADNQGIEAYF
481 HAQFLVVESG SGKGRKSSLH FTHAFKPQCW YFIGLEHSCK QGLLGKTESQ LRLYIDGSLY
541 ESRPFDFPRI SKPLSFCCIG TNPPPTMAGL QRRRRQCPLF AEMGPVYIFK EPIGPEKMAR
601 LASRGGDVLP CFGNGAGLPW LATNDYVRNR AEENSNLDAD IGGYAHLLYH PCLLSGRFCP
661 DASLSGAAGT LRRPAEVLGQ VHVATRIKPV ESFWALAYGG PMSLLPLTVS NVHKDSLEPC
721 PGNLPLSLST VTLAAPVFRI MAVAIQHPGN NEELCRTQGP EILARILSYL LHSLASLDRK
781 HDGVGEEELV AAIVSLCQSQ KINHVLKVQL FRTLLLDLKI WSLCNYGLQK KLLSSLQDMV
841 FTEATAMRNA EAIQLLLDGC RRCYWMISEK DSETTFPLDG NTRQMGELNA LIDELLVIIE
901 LLMGAASPSL ASDDLRRLLG FIIDSPQPNQ VARVLHLMYR LVVQPNAARA QMFAEVFITS
961 GGIETLLVLL QREAKTGEDN VLDMGKSGVR SSTDQSEKSQ NDGSTSVKKL DSSVESSGPD
1021 GNSVEDDNLG SLTEPASDPQ EKEHVFSSVI RENDSNSISH SIDTERISSV SEIGGISLSI
1081 SADSARNNVY NVDNSDAVVV GVIRLIGALI SSGHLTFDSV ARSDATSNIV GSGLHENGGT
1141 MFDDKVALLL FALLKAFQSA PNRLMTDNVY TTLLGASINA SSTEDGLNFY DSGHRFEHSQ
1201 LLLVLLRSLP SAPKALQSRA LQDLLFLACS HPENRSSLTK MEEWPEWILE ILISNYEKDA
1261 GKQSVLAGSS EVEDLIHNFL IIMLEHSMRQ KDGWKDIEAT IHCAEWLSIV GGSSTGEQRI
1321 RREESLPIFK RRLFGGLLDF AARELQAQTQ VIAAAAAGVA AEGLTPKDAK AGAENAAQLS
1381 VFLVENAIVI LMLVEDHLRL QSKQICTTNA VDASPSPLSL VSLKNRTSTL TAIGESSEIS
1441 SSRASLSSDS GKVPLDILAS MADSSGQISA VAMERLTVAA AAEPYESVSC AFVSYGSCAM
1501 DLAEGWKYRS RLWYGVGFPS KTSSFGGGGS GSDSWKSTLE KDTHGNWIEL PLVKKSVSML
1561 QALLLDESGL GGGLGIGGGS GTGMGGMTAL YQLLDSDQPF LCMLRMVLLS MREEDYGEDN
1621 MLMRNLSSEL SSGNSVTLDS GSQMSMRQSR SALLWSVLSP ILNMPISDSK RQRVLVTACV
1681 LYSEVWHAIS LDRRPLRKQY IEAILPPFVA VLRRWRPLLA GIHELATADG MNPLVVDDRA
1741 LAADALPVEG ALSMITPEWA AAFASPPAAM ALAMIAAGAA GWEAPPPPTP SHFRRDSSML
1801 ERKTAKLQTF SSFQKPLEPP NNNAPPRPRD KAAAKAAALA AARDLERNAK IGSGRGLSAV
1861 AMATSAQRRN IGDLERLQRW NTSEAMGVAW MECLQPMDTK SVYGKDFNAL SYKFIAVLVA
1921 SFALARNMQR SEIDRRMQDD IIAANRLCLG SRGWRKLIRY LAEMRCFFGP FGDEICSPER
1981 VFWKLDSMES FSRMRQCIRR DYCGTDHLGA AANYDDQTDT KSDNGSKGSP SNPPILAADA
2041 ISMEIAYEDD EHGEGDHLDI KGNAEEYRRE NEERISGSHE HASRNSAGTS DPRTSNDREM
2101 VRDSSAVSPG FVPSELDERI LLEFPTSMVR PLRVVKGTFQ ITTRRINFIV DIRESQNLTD
2161 HSYGSQSRDQ EKDRTWPMSS LHQIYSRRYL LRRSALELFM VDRSNFFFDF GNTDGRRNAY
2221 RAIVQARPPH LNNIYLATQR PEQLLRRTQL MERWARWEIS NFEYLMQLNT LAGRSYNDIT
2281 QYPVFPWIIS DNSSESLDFS NPSTFRDLSK PIGALNPERL KKFQERYSSF EDPVIPKFHY
2341 GSHYSSAGAV LYYLARVEPF TTLSIQLQGG KFDHADRMFS DIPGTWNGVL EDMSDVKELV
2401 PELFYLPEVL TNENSIDFGT TQLGEKLDAV KLPPWAKNPV DFVHKQRRAL ESEHVSAHIH
2461 EWIDLIFGYK QRGKEAIMAN NVFFYITYEG TVDIDKITDP VQQRATQDQI AYFGQTPSQL
2521 LTVPHMKRMP LKDVLHMQTI FRNPKEIKPY AVQAPERCNI PASAIQASSD SVVIVDMNVP
2581 AARVAQHKWQ PNTPDGQGTP FLFHHGKATS TSTSGSFVRM FKGPASSGTG DWQFPQAQAF
2641 VASGIRSSSV VAITSDGEII TGGHADNSIK LVSSDGAKTL ETAFGHCAPV TCLALSPDNN
2701 FLVTGSRDST VLLWRIHKAF TSRTSVSEPS TGSGAASSAS NTNLANTSAN KGKNCRLEGP
2761 IQVLRGHRRE VICCCVSSDQ GVVVSSSESS DVLLHSTRKG RLIRRLVGVT ADSLCISSDG
2821 VIMAWSSLEG SVSVFTINGV LIAKAKLPFS CSISCMEISM DGQNALIGMN SCSRMDLSST
2881 NDTSTDGKEI ERLDVPSPSI CFLNLYTLKV FHVLKLGQGQ DITALALNVD DTNLIVSTED
2941 KQLIIFTDPA LSLKVVDQML KLGWE
//