LOCUS CZR14648.1 813 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Liprin-beta homolog protein. ACCESSION BX284606-3327 PROTEIN_ID CZR14648.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="hlb-1" /locus_tag="CELE_T21H8.1" /standard_name="T21H8.1s" /note="Partially confirmed by transcript evidence" /db_xref="GOA:Q94071" /db_xref="InterPro:IPR001660" /db_xref="InterPro:IPR013761" /db_xref="InterPro:IPR029515" /db_xref="InterPro:IPR030444" /db_xref="InterPro:IPR037617" /db_xref="InterPro:IPR037618" /db_xref="UniProtKB/Swiss-Prot:Q94071" /db_xref="WormBase:WBGene00011904" intron_pos 10:0 (1/12) intron_pos 44:0 (2/12) intron_pos 82:0 (3/12) intron_pos 129:0 (4/12) intron_pos 211:0 (5/12) intron_pos 315:2 (6/12) intron_pos 358:0 (7/12) intron_pos 420:1 (8/12) intron_pos 656:0 (9/12) intron_pos 702:0 (10/12) intron_pos 765:0 (11/12) intron_pos 802:0 (12/12) BEGIN 1 MAQRRAKSKS PSPSMSTVSC PEYPELQDKL HRLAMARDSL QLQVSVLSEQ VGAQKEKIKD 61 LETVIALKRN NLTSTEELLQ DKYHRIDECQ ELESKKMDLL AEVSSLKLRY ATLEREKNET 121 EKKLRLSQNE MDHVNQSMHG MVVQQQLAHH TNGHSSGGYM SPLREHRSEK NDDEMSQLRT 181 AVQRLMADNE HKSLQINTLR NALDEQMRSR SQQEDFYASQ RNYTDNFDVN AQIRRILMDE 241 PSDSMSHSTS FPVSLSSTTS NGKGPRSTVQ SSSSYNSSLS AVSPQHNWSS AGAGTPRQLH 301 PIGGNQRVNN ITSAQYCSPS PPAARQLAAE LDELRRNGNE GANHNYSSAS LPRGVGKASS 361 TLTLPSKKLS VASGTSVGEL GGSMSSVAQP TPKRNYRAQM NRWINEKLRR KRAVSAPNLV 421 ESDDEIARGR NLNNATSQSN LKNFSRERTR SSLRNIFSKL TRSTSQDQSN SFRRGSAARS 481 TSTARLGSTN HLGTVSKRPP LSQFVDWRSE QLADWIAEIG YPQYMNEVSR HVRSGRHFLN 541 MSMNEYEGVL NIKNPVHRKR VAILLRRIEE DIMEPANKWD VHQTLRWLDD IGLPQYKDVF 601 AENVVDGPLL LSLTANDAVE MKVVNAHHYA TLARSIQFLK KADFRFNAME KLIDQNIVEK 661 YPCPDVVVRW THSATCEWLR KIDLAEFTQN LLFAGVPGAL MIYEPSFTAE SLAEILQMPP 721 HKTLLRRHLT SHFNQLLGPK IIADKRDFLA AGNYPQISPT GRVKVVKKGF SLTRKKAKNE 781 ICLEPEELLC PQVLVHKYPT GAGDNSSFES SNV //