LOCUS CZR14647.1 771 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Liprin-beta homolog protein. ACCESSION BX284606-3326 PROTEIN_ID CZR14647.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="hlb-1" /locus_tag="CELE_T21H8.1" /standard_name="T21H8.1r" /note="Confirmed by transcript evidence" /db_xref="GOA:Q94071" /db_xref="InterPro:IPR001660" /db_xref="InterPro:IPR013761" /db_xref="InterPro:IPR029515" /db_xref="InterPro:IPR030444" /db_xref="InterPro:IPR037617" /db_xref="InterPro:IPR037618" /db_xref="UniProtKB/Swiss-Prot:Q94071" /db_xref="WormBase:WBGene00011904" intron_pos 10:0 (1/12) intron_pos 44:0 (2/12) intron_pos 82:0 (3/12) intron_pos 129:0 (4/12) intron_pos 211:0 (5/12) intron_pos 315:2 (6/12) intron_pos 358:0 (7/12) intron_pos 378:1 (8/12) intron_pos 614:0 (9/12) intron_pos 660:0 (10/12) intron_pos 723:0 (11/12) intron_pos 760:0 (12/12) BEGIN 1 MAQRRAKSKS PSPSMSTVSC PEYPELQDKL HRLAMARDSL QLQVSVLSEQ VGAQKEKIKD 61 LETVIALKRN NLTSTEELLQ DKYHRIDECQ ELESKKMDLL AEVSSLKLRY ATLEREKNET 121 EKKLRLSQNE MDHVNQSMHG MVVQQQLAHH TNGHSSGGYM SPLREHRSEK NDDEMSQLRT 181 AVQRLMADNE HKSLQINTLR NALDEQMRSR SQQEDFYASQ RNYTDNFDVN AQIRRILMDE 241 PSDSMSHSTS FPVSLSSTTS NGKGPRSTVQ SSSSYNSSLS AVSPQHNWSS AGAGTPRQLH 301 PIGGNQRVNN ITSAQYCSPS PPAARQLAAE LDELRRNGNE GANHNYSSAS LPRGVGKASS 361 TLTLPSKKLS VASGTSVVES DDEIARGRNL NNATSQSNLK NFSRERTRSS LRNIFSKLTR 421 STSQDQSNSF RRGSAARSTS TARLGSTNHL GTVSKRPPLS QFVDWRSEQL ADWIAEIGYP 481 QYMNEVSRHV RSGRHFLNMS MNEYEGVLNI KNPVHRKRVA ILLRRIEEDI MEPANKWDVH 541 QTLRWLDDIG LPQYKDVFAE NVVDGPLLLS LTANDAVEMK VVNAHHYATL ARSIQFLKKA 601 DFRFNAMEKL IDQNIVEKYP CPDVVVRWTH SATCEWLRKI DLAEFTQNLL FAGVPGALMI 661 YEPSFTAESL AEILQMPPHK TLLRRHLTSH FNQLLGPKII ADKRDFLAAG NYPQISPTGR 721 VKVVKKGFSL TRKKAKNEIC LEPEELLCPQ VLVHKYPTGA GDNSSFESSN V //