LOCUS CZR14604.1 928 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Nephrin protein.
ACCESSION BX284606-3521
PROTEIN_ID CZR14604.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="syg-2"
/locus_tag="CELE_C26G2.1"
/standard_name="C26G2.1f"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A131MBS5"
/db_xref="InterPro:IPR003598"
/db_xref="InterPro:IPR003599"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR013098"
/db_xref="InterPro:IPR013162"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR036116"
/db_xref="InterPro:IPR036179"
/db_xref="UniProtKB/TrEMBL:A0A131MBS5"
/db_xref="WormBase:WBGene00007750"
intron_pos 27:1 (1/17)
intron_pos 53:2 (2/17)
intron_pos 81:0 (3/17)
intron_pos 127:1 (4/17)
intron_pos 172:0 (5/17)
intron_pos 185:0 (6/17)
intron_pos 237:1 (7/17)
intron_pos 298:2 (8/17)
intron_pos 346:1 (9/17)
intron_pos 442:0 (10/17)
intron_pos 487:2 (11/17)
intron_pos 593:0 (12/17)
intron_pos 685:0 (13/17)
intron_pos 775:1 (14/17)
intron_pos 827:0 (15/17)
intron_pos 854:1 (16/17)
intron_pos 876:0 (17/17)
BEGIN
1 MAEYECRANN SRTGNPKRKA MKLEVNYPPA SVELFGESNI RYGSSANIQC KSLPSNPASQ
61 ITWIINGRSV PTPTQREFVV ENGIVSSSNV SVHSNELSVE AHQINVECMA TNPEGSSAKQ
121 HVIKIIAPPK APIITGLEDR KFFEGDIVNV TCEAQGGNPL AELSWYRGSE KHLVKGRKKM
181 KWSQVNGAHN EVAGFSSYST LALRVDRTMN TQRLKCEATN AALDEPLIES QYLSVYYPPR
241 RVLIRPADSG DQRLLVGKSA RLVCGTLSSN PAAHISWQFS RATDDNKVHL GDVSLNETTR
301 DNGFNVENVL SFTPTEEYDG TVVHCIANHP EWKHSVNTSF PLNVMYPPKM LVNDPVTVVM
361 SEGDSFKENL TVRGNPAISL WQWRKNGVPF DHTIGRVFAR GAVLSGKQLL STDAGVYTLT
421 ATNSVGSTNI TIKLAVEYSA RITSISTPVI AATGDTVLLE CEADGEPSKA NMIHWYKNGE
481 ILAAQHRGHK KAILRLNATE QQSGEYTCKA DNGIGVPAEG QTFLLVNSAP RVLPVARYAK
541 TAGILGGVAK ARCKVYAVPT VEFVWEKDEQ LIKKNSSKYS IVNTQIDYST YESTLWIKNI
601 VPDDYTKKVK CIARNSFGTD HLSIPIIPPT HPDEPFNLTM TNSTLNTISV AWEPRFDGGS
661 DQIFEVKYRR QNDDLIHLVN TTHTNLRLSG LATANTYFFQ IRSINARGFA SSWTSPVIFA
721 TLNEDGVNVA MIRNEKLKLT TWIPYILIFI VLFMLLNVVI CCFVCNRTKK RKLREKTEMA
781 RTAINGGDVR QVQMYGTMMG NDGMSRRDID DRPEMSEDEH SVRTMIEVSP NGYMQPIEPM
841 LYESTGLLEY DYQTRSYMGS SQGTRSMTYA NVPYPEPPQP SYHSNWNSLQ RQSNNNTSPQ
901 HHLSTFINPN MGVRAGPINY AQLDGDLV
//