LOCUS CTQ87098.1 952 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans G-protein coupled receptors family
3 profile domain-containing protein protein.
ACCESSION BX284606-2350
PROTEIN_ID CTQ87098.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="mgl-1"
/locus_tag="CELE_ZC506.4"
/standard_name="ZC506.4c"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00003232"
/db_xref="GOA:A0A0K3ASV1"
/db_xref="InterPro:IPR000162"
/db_xref="InterPro:IPR000337"
/db_xref="InterPro:IPR001828"
/db_xref="InterPro:IPR011500"
/db_xref="InterPro:IPR017978"
/db_xref="InterPro:IPR017979"
/db_xref="InterPro:IPR028082"
/db_xref="InterPro:IPR038550"
/db_xref="UniProtKB/TrEMBL:A0A0K3ASV1"
/db_xref="WormBase:WBGene00003232"
intron_pos 7:0 (1/19)
intron_pos 35:0 (2/19)
intron_pos 47:0 (3/19)
intron_pos 82:2 (4/19)
intron_pos 110:0 (5/19)
intron_pos 146:2 (6/19)
intron_pos 209:2 (7/19)
intron_pos 246:1 (8/19)
intron_pos 284:2 (9/19)
intron_pos 408:2 (10/19)
intron_pos 441:0 (11/19)
intron_pos 490:1 (12/19)
intron_pos 545:0 (13/19)
intron_pos 579:0 (14/19)
intron_pos 658:2 (15/19)
intron_pos 745:0 (16/19)
intron_pos 769:1 (17/19)
intron_pos 852:0 (18/19)
intron_pos 900:2 (19/19)
BEGIN
1 MRQTFRKPPS IIRHMFSVLA LAIQILANVN VVAQTTEAVD LAPPPKVRQI RIPGDILIGG
61 VFPVHSKSLN GDEPCGEIAE TRGVHRVEAM LYALDQINSQ NDFLRGYKLG ALILDSCSNP
121 AYALNQSLDF VRDMIGSSEA SDYVCLDGSD PNLKKQSQKK NVAAVVGGSY SSVSVQLANL
181 LRLFRIAQVS PASTNADLSD KNRFEYFART VPSDDYQAMA MVEIAVKFKW SYVSLVYSAD
241 EYGELGADAF KKEARKKGIC IALEERIQNK KESFTESINN LVQKLQPEKN VGATVVVLFV
301 GTEYIPDILR YTAERMKLTS GAKKRIIWLA SESWDRNNDK YTAGDNRLAA QGAIVLMLAS
361 QKVPSFEEYF MSLHPGTEAF ERNKWLRELW QVKYKCEFDT PPGSTASRCE DIKQSTEGFN
421 ADDKVQFVID AVYAIAHGLQ SMKQAICPDD AIENHWISRY SKQPEICHAM QNIDGSDFYQ
481 NYLLKVNFTD IVGKRFRFSP QGDGPASYTI LTYKPKSMDK KRRMTDDESS PSDYVEIGHW
541 SENNLTIYEK NLWWDPDHTP VSVCSLPCKI GFRKQLIKDE QCCWACSKCE DYEYLINETH
601 CVGCEQGWWP TKDRKGCFDL SLSQLKYMRW RSMYSLVPTI LAVFGIIATL FVIVVYVIYN
661 ETPVVKASGR ELSYILLISM IMCYCMTFVL LSKPSAIVCA IKRTGIGFAF SCLYSAMFVK
721 TNRIFRIFST RSAQRPRFIS PISQVVMTAM LAGVQLIGSL IWLSVVPPGW RHHYPTRDQV
781 VLTCNVPDHH FLYSLAYDGF LIVLCTTYAV KTRKVPENFN ETKFIGFSMY TTCVVWLSWI
841 FFFFGTGSDF QIQTSSLCIS ISMSANVALA CIFSPKLWII LFEKHKNVRK QEGESMLNKS
901 SRSLGNCSSR LCANSIDEPN QYTALLTDST RRRSSRKTSQ PTSTSSAHDT FL
//