LOCUS CTQ87086.1 1321 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans SAP domain-containing protein protein.
ACCESSION BX284606-1155
PROTEIN_ID CTQ87086.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="pqn-62"
/locus_tag="CELE_T03G11.1"
/standard_name="T03G11.1c"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004145"
/db_xref="InterPro:IPR003034"
/db_xref="InterPro:IPR036361"
/db_xref="UniProtKB/TrEMBL:A0A0K3ATD0"
/db_xref="WormBase:WBGene00004145"
intron_pos 40:0 (1/17)
intron_pos 84:0 (2/17)
intron_pos 308:0 (3/17)
intron_pos 415:0 (4/17)
intron_pos 450:1 (5/17)
intron_pos 506:2 (6/17)
intron_pos 565:0 (7/17)
intron_pos 605:2 (8/17)
intron_pos 652:0 (9/17)
intron_pos 722:1 (10/17)
intron_pos 772:2 (11/17)
intron_pos 827:2 (12/17)
intron_pos 912:0 (13/17)
intron_pos 947:0 (14/17)
intron_pos 993:0 (15/17)
intron_pos 1247:1 (16/17)
intron_pos 1281:0 (17/17)
BEGIN
1 MCTFSESMEL LNQPTSTPNQ HPHHSSNGAD MNSIGSYMNH LQQPSQMSGP HQRPSNGSNN
61 LEQHAMRPAT TGGDPSNRVF NDQKSSIDGS LHQGSNSNQM TQESMMSLQQ NPMQQHHHQS
121 NQMVSYNLVS EDSSVRLPPL TLNDRSYSIS STVHLSNGLQ CQLQQNELTD NTHQSSQVNQ
181 CDYNQNMSEQ SEQPILRPSR MESTNQSHQN IDSMYHIDQP QQVVFQANLQ NRSNRVMQQT
241 PNNSSNHQNH LSLKQPHLSM NSTQLQSGFQ TGNRMMPSFQ VNPTTQDQVP HLSHMDQPPP
301 TQHSMNSISQ SQQHPSQLSQ LSCNSNQMSV QNHVLSPSST NSNMSLNMRS NSISSSSSSP
361 IKNSILPSTS PCTIPMNANS TTQLLMALNN NSPITSEQLQ EIQNMTTISA DGTEILLMQE
421 PRLKQYPSIA EMCTTDLRSA CKKRSLPHTG PKPRLCERLR GHENEVLEER NRQNMKEYTD
481 RHQMYEAQAA TLKAYQAKKA LLQVQSSPDM GTSNVYGARS NSSQCISSNE NSMSSTSVEG
541 PPAKKKRISK PKKALQSRLE KQTTITVAPQ NSLTIPADSC NQGSTTTNAI RTLVNNTNLM
601 GGSNTQNGNT MVNGQSSQNS SSNFFGDMNQ TGTGFFMKDN SCFSHLGSGC RLISASSNDD
661 SQNTFGGTGR AFQAAVPPPP ENSQLQFQNF GMTETIPQQS NEHVSQQQQQ IAQSRPMNLN
721 QQQVIETPVN QSISNIFNIS TANTMQQQQQ QNVQQQPQQQ PNFINSSMAQ NGLQASPCVA
781 DQAGPSPSMP VSDPIATTSG SPVVVSAVAE STSESAELMD LETMQNLLSP ATLRAREDLL
841 TQQQAKINEL VKLIQKNHDT LREQQQQINL AKKQQKQRQR QNVPSAPLDK HVNSRCIQHA
901 IKSRQNFQMI NELTTQQDSI RTAETRLIEQ LHINTATDDI ARLIKQDGRT ALVIVSLLHD
961 YRTTREQNNR AKSTTGEQPV VADSTAVEVT KKKAPARKRN ANGTTKTAPS KKTAQQKQAV
1021 DNDVIQIISS TNEQKIPVEQ SQQQNQQQNS QKQFLEFHHP HVPQRVSSQS DVDMEAIFKT
1081 VIDASRSQQK ESQTKQQQQP QQQQYDNEVI SLPSEVSSPM RTQSQNSVQS VFSDGSYSRN
1141 MAFQQENSPQ EITYSMSNGA ESNTSQQNES PLQNSQHSEV VSKQSDIVEI LPQFDQNVMN
1201 HDVNQFHSNM IYNEDSNQEF IAQNSQTHDL DFDFPDIDQM VANIRDSDPL SCPLDDIDLT
1261 AILNSWTETS DPKQQHTSAD MNMCDDLVYD GSQMINQDMN WNDYDPQSNI INQAFEQSQI
1321 N
//