LOCUS CTQ87056.1 780 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Smad protein daf-3 protein. ACCESSION BX284606-180 PROTEIN_ID CTQ87056.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="daf-3" /locus_tag="CELE_F25E2.5" /standard_name="F25E2.5h" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00000899" /db_xref="EnsemblGenomes-Tr:F25E2.5c" /db_xref="EnsemblGenomes-Tr:F25E2.5h" /db_xref="GOA:A0A0K3ATA0" /db_xref="InterPro:IPR001132" /db_xref="InterPro:IPR003619" /db_xref="InterPro:IPR008984" /db_xref="InterPro:IPR013019" /db_xref="InterPro:IPR013790" /db_xref="InterPro:IPR017855" /db_xref="InterPro:IPR036578" /db_xref="UniProtKB/TrEMBL:A0A0K3ATA0" /db_xref="WormBase:WBGene00000899" intron_pos 46:1 (1/11) intron_pos 97:0 (2/11) intron_pos 177:0 (3/11) intron_pos 219:0 (4/11) intron_pos 439:1 (5/11) intron_pos 483:0 (6/11) intron_pos 523:2 (7/11) intron_pos 541:1 (8/11) intron_pos 598:2 (9/11) intron_pos 701:0 (10/11) intron_pos 746:2 (11/11) BEGIN 1 MMSPVNTTTK ILQRSGIKME IPPYLDPDSQ DDDPEDGVNY PDPDLFDTKN TNMTEYDLDV 61 LKLGKPAVDE ARKKIEVPDA SAPPNKIVEY LMYYRTLKES ELIQLNAYRT KRNRLSLNLV 121 KNNIDREFDQ KACESLVKKL KDKKNDLQNL IDVVLSKGTK YTGCITIPRT LDGRLQVHGR 181 KGFPHVVYGK LWRFNEMTKN ETRHVDHCKH AFEMKSDMVC VNPYHYEIVI GTMIVGQRDH 241 DNRDMPPPHQ RYHTPGRQDP VDDMSRFIPP ASIRPPPMNM HTRPQPMPQQ LPSVGATFAH 301 PLPHQAPHNP GVSHPYSIAP QTHYPLNMNP IPQMPQMPQM PPPLHQGYGM NGPSCSSENN 361 NPFHQNHHYN DISHPNHYSY DCGPNLYGFP TPYPDFHHPF NQQPHQPPQL SQNHTSQQGS 421 HQPGHQGQVP NDPPISRPVL QPSTVTLDVF RRYCRQTFGN RFFEGESEQS GAIIRSSNKF 481 IEEFDSPICG VTVVRPRMTD GEVLENIMPE DAPYHDICKF ILRLTSESVT FSGEGPEVSD 541 LNEKWGTIVY YEKNLQIGEK KCSRGNFHVD GGFICSENRY SLGLEPNPIR EPVAFKVRKA 601 IVDGIRFSYK KDGSVWLQNR MKYPVFVTSG YLDEQSGGLK KDKVHKVYGC ASIKTFGFNV 661 SKQIIRDALL SKQMATMYLQ GKLTPMNYIY EKKTQEELRR EATRTTDSLA KYCCVRVSFC 721 KGFGEAYPER PSIHDCPVWI ELKINIAYDF MDSICQYITN CFEPLGMEDF AKLGINVSDD //