LOCUS       CTQ87056.1               780 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Smad protein daf-3 protein.
ACCESSION   BX284606-180
PROTEIN_ID  CTQ87056.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="daf-3"
                     /locus_tag="CELE_F25E2.5"
                     /standard_name="F25E2.5h"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00000899"
                     /db_xref="EnsemblGenomes-Tr:F25E2.5c"
                     /db_xref="EnsemblGenomes-Tr:F25E2.5h"
                     /db_xref="GOA:A0A0K3ATA0"
                     /db_xref="InterPro:IPR001132"
                     /db_xref="InterPro:IPR003619"
                     /db_xref="InterPro:IPR008984"
                     /db_xref="InterPro:IPR013019"
                     /db_xref="InterPro:IPR013790"
                     /db_xref="InterPro:IPR017855"
                     /db_xref="InterPro:IPR036578"
                     /db_xref="UniProtKB/TrEMBL:A0A0K3ATA0"
                     /db_xref="WormBase:WBGene00000899"
     intron_pos      46:1 (1/11)
     intron_pos      97:0 (2/11)
     intron_pos      177:0 (3/11)
     intron_pos      219:0 (4/11)
     intron_pos      439:1 (5/11)
     intron_pos      483:0 (6/11)
     intron_pos      523:2 (7/11)
     intron_pos      541:1 (8/11)
     intron_pos      598:2 (9/11)
     intron_pos      701:0 (10/11)
     intron_pos      746:2 (11/11)
BEGIN
        1 MMSPVNTTTK ILQRSGIKME IPPYLDPDSQ DDDPEDGVNY PDPDLFDTKN TNMTEYDLDV
       61 LKLGKPAVDE ARKKIEVPDA SAPPNKIVEY LMYYRTLKES ELIQLNAYRT KRNRLSLNLV
      121 KNNIDREFDQ KACESLVKKL KDKKNDLQNL IDVVLSKGTK YTGCITIPRT LDGRLQVHGR
      181 KGFPHVVYGK LWRFNEMTKN ETRHVDHCKH AFEMKSDMVC VNPYHYEIVI GTMIVGQRDH
      241 DNRDMPPPHQ RYHTPGRQDP VDDMSRFIPP ASIRPPPMNM HTRPQPMPQQ LPSVGATFAH
      301 PLPHQAPHNP GVSHPYSIAP QTHYPLNMNP IPQMPQMPQM PPPLHQGYGM NGPSCSSENN
      361 NPFHQNHHYN DISHPNHYSY DCGPNLYGFP TPYPDFHHPF NQQPHQPPQL SQNHTSQQGS
      421 HQPGHQGQVP NDPPISRPVL QPSTVTLDVF RRYCRQTFGN RFFEGESEQS GAIIRSSNKF
      481 IEEFDSPICG VTVVRPRMTD GEVLENIMPE DAPYHDICKF ILRLTSESVT FSGEGPEVSD
      541 LNEKWGTIVY YEKNLQIGEK KCSRGNFHVD GGFICSENRY SLGLEPNPIR EPVAFKVRKA
      601 IVDGIRFSYK KDGSVWLQNR MKYPVFVTSG YLDEQSGGLK KDKVHKVYGC ASIKTFGFNV
      661 SKQIIRDALL SKQMATMYLQ GKLTPMNYIY EKKTQEELRR EATRTTDSLA KYCCVRVSFC
      721 KGFGEAYPER PSIHDCPVWI ELKINIAYDF MDSICQYITN CFEPLGMEDF AKLGINVSDD
//