LOCUS CTQ87055.1 783 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Smad protein daf-3 protein.
ACCESSION BX284606-179
PROTEIN_ID CTQ87055.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="daf-3"
/locus_tag="CELE_F25E2.5"
/standard_name="F25E2.5g"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000899"
/db_xref="EnsemblGenomes-Tr:F25E2.5g.1"
/db_xref="EnsemblGenomes-Tr:F25E2.5g.2"
/db_xref="GOA:A0A0K3AYJ4"
/db_xref="InterPro:IPR001132"
/db_xref="InterPro:IPR003619"
/db_xref="InterPro:IPR008984"
/db_xref="InterPro:IPR013019"
/db_xref="InterPro:IPR013790"
/db_xref="InterPro:IPR017855"
/db_xref="InterPro:IPR036578"
/db_xref="UniProtKB/TrEMBL:A0A0K3AYJ4"
/db_xref="WormBase:WBGene00000899"
intron_pos 46:1 (1/11)
intron_pos 97:0 (2/11)
intron_pos 177:0 (3/11)
intron_pos 222:0 (4/11)
intron_pos 442:1 (5/11)
intron_pos 486:0 (6/11)
intron_pos 526:2 (7/11)
intron_pos 544:1 (8/11)
intron_pos 601:2 (9/11)
intron_pos 704:0 (10/11)
intron_pos 749:2 (11/11)
BEGIN
1 MMSPVNTTTK ILQRSGIKME IPPYLDPDSQ DDDPEDGVNY PDPDLFDTKN TNMTEYDLDV
61 LKLGKPAVDE ARKKIEVPDA SAPPNKIVEY LMYYRTLKES ELIQLNAYRT KRNRLSLNLV
121 KNNIDREFDQ KACESLVKKL KDKKNDLQNL IDVVLSKGTK YTGCITIPRT LDGRLQVHGR
181 KGFPHVVYGK LWRFNEMTKN ETRHVDHCKH AFEMKSDMVG EVCVNPYHYE IVIGTMIVGQ
241 RDHDNRDMPP PHQRYHTPGR QDPVDDMSRF IPPASIRPPP MNMHTRPQPM PQQLPSVGAT
301 FAHPLPHQAP HNPGVSHPYS IAPQTHYPLN MNPIPQMPQM PQMPPPLHQG YGMNGPSCSS
361 ENNNPFHQNH HYNDISHPNH YSYDCGPNLY GFPTPYPDFH HPFNQQPHQP PQLSQNHTSQ
421 QGSHQPGHQG QVPNDPPISR PVLQPSTVTL DVFRRYCRQT FGNRFFEGES EQSGAIIRSS
481 NKFIEEFDSP ICGVTVVRPR MTDGEVLENI MPEDAPYHDI CKFILRLTSE SVTFSGEGPE
541 VSDLNEKWGT IVYYEKNLQI GEKKCSRGNF HVDGGFICSE NRYSLGLEPN PIREPVAFKV
601 RKAIVDGIRF SYKKDGSVWL QNRMKYPVFV TSGYLDEQSG GLKKDKVHKV YGCASIKTFG
661 FNVSKQIIRD ALLSKQMATM YLQGKLTPMN YIYEKKTQEE LRREATRTTD SLAKYCCVRV
721 SFCKGFGEAY PERPSIHDCP VWIELKINIA YDFMDSICQY ITNCFEPLGM EDFAKLGINV
781 SDD
//