LOCUS CTQ87054.1 858 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Smad protein daf-3 protein.
ACCESSION BX284606-177
PROTEIN_ID CTQ87054.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="daf-3"
/locus_tag="CELE_F25E2.5"
/standard_name="F25E2.5f"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000899"
/db_xref="EnsemblGenomes-Tr:F25E2.5f"
/db_xref="GOA:A0A0K3AWB3"
/db_xref="InterPro:IPR001132"
/db_xref="InterPro:IPR003619"
/db_xref="InterPro:IPR008984"
/db_xref="InterPro:IPR013019"
/db_xref="InterPro:IPR013790"
/db_xref="InterPro:IPR017855"
/db_xref="InterPro:IPR036578"
/db_xref="UniProtKB/TrEMBL:A0A0K3AWB3"
/db_xref="WormBase:WBGene00000899"
intron_pos 9:1 (1/13)
intron_pos 72:1 (2/13)
intron_pos 124:1 (3/13)
intron_pos 175:0 (4/13)
intron_pos 255:0 (5/13)
intron_pos 297:0 (6/13)
intron_pos 517:1 (7/13)
intron_pos 561:0 (8/13)
intron_pos 601:2 (9/13)
intron_pos 619:1 (10/13)
intron_pos 676:2 (11/13)
intron_pos 779:0 (12/13)
intron_pos 824:2 (13/13)
BEGIN
1 MGDHHNLTGL PGTSIPPQFN YSQPGTSTGG PLYGGKPSHG LEDIPDVEEY ERNLLGAGAG
61 FNLLNVGNMA NVPDEHTPMM SPVNTTTKIL QRSGIKMEIP PYLDPDSQDD DPEDGVNYPD
121 PDLFDTKNTN MTEYDLDVLK LGKPAVDEAR KKIEVPDASA PPNKIVEYLM YYRTLKESEL
181 IQLNAYRTKR NRLSLNLVKN NIDREFDQKA CESLVKKLKD KKNDLQNLID VVLSKGTKYT
241 GCITIPRTLD GRLQVHGRKG FPHVVYGKLW RFNEMTKNET RHVDHCKHAF EMKSDMVCVN
301 PYHYEIVIGT MIVGQRDHDN RDMPPPHQRY HTPGRQDPVD DMSRFIPPAS IRPPPMNMHT
361 RPQPMPQQLP SVGATFAHPL PHQAPHNPGV SHPYSIAPQT HYPLNMNPIP QMPQMPQMPP
421 PLHQGYGMNG PSCSSENNNP FHQNHHYNDI SHPNHYSYDC GPNLYGFPTP YPDFHHPFNQ
481 QPHQPPQLSQ NHTSQQGSHQ PGHQGQVPND PPISRPVLQP STVTLDVFRR YCRQTFGNRF
541 FEGESEQSGA IIRSSNKFIE EFDSPICGVT VVRPRMTDGE VLENIMPEDA PYHDICKFIL
601 RLTSESVTFS GEGPEVSDLN EKWGTIVYYE KNLQIGEKKC SRGNFHVDGG FICSENRYSL
661 GLEPNPIREP VAFKVRKAIV DGIRFSYKKD GSVWLQNRMK YPVFVTSGYL DEQSGGLKKD
721 KVHKVYGCAS IKTFGFNVSK QIIRDALLSK QMATMYLQGK LTPMNYIYEK KTQEELRREA
781 TRTTDSLAKY CCVRVSFCKG FGEAYPERPS IHDCPVWIEL KINIAYDFMD SICQYITNCF
841 EPLGMEDFAK LGINVSDD
//