LOCUS CTQ87053.1 861 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Smad protein daf-3 protein.
ACCESSION BX284606-176
PROTEIN_ID CTQ87053.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="daf-3"
/locus_tag="CELE_F25E2.5"
/standard_name="F25E2.5e"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000899"
/db_xref="EnsemblGenomes-Tr:F25E2.5e"
/db_xref="GOA:A0A0K3ASQ1"
/db_xref="InterPro:IPR001132"
/db_xref="InterPro:IPR003619"
/db_xref="InterPro:IPR008984"
/db_xref="InterPro:IPR013019"
/db_xref="InterPro:IPR013790"
/db_xref="InterPro:IPR017855"
/db_xref="InterPro:IPR036578"
/db_xref="UniProtKB/TrEMBL:A0A0K3ASQ1"
/db_xref="WormBase:WBGene00000899"
intron_pos 9:1 (1/13)
intron_pos 72:1 (2/13)
intron_pos 124:1 (3/13)
intron_pos 175:0 (4/13)
intron_pos 255:0 (5/13)
intron_pos 300:0 (6/13)
intron_pos 520:1 (7/13)
intron_pos 564:0 (8/13)
intron_pos 604:2 (9/13)
intron_pos 622:1 (10/13)
intron_pos 679:2 (11/13)
intron_pos 782:0 (12/13)
intron_pos 827:2 (13/13)
BEGIN
1 MGDHHNLTGL PGTSIPPQFN YSQPGTSTGG PLYGGKPSHG LEDIPDVEEY ERNLLGAGAG
61 FNLLNVGNMA NVPDEHTPMM SPVNTTTKIL QRSGIKMEIP PYLDPDSQDD DPEDGVNYPD
121 PDLFDTKNTN MTEYDLDVLK LGKPAVDEAR KKIEVPDASA PPNKIVEYLM YYRTLKESEL
181 IQLNAYRTKR NRLSLNLVKN NIDREFDQKA CESLVKKLKD KKNDLQNLID VVLSKGTKYT
241 GCITIPRTLD GRLQVHGRKG FPHVVYGKLW RFNEMTKNET RHVDHCKHAF EMKSDMVGEV
301 CVNPYHYEIV IGTMIVGQRD HDNRDMPPPH QRYHTPGRQD PVDDMSRFIP PASIRPPPMN
361 MHTRPQPMPQ QLPSVGATFA HPLPHQAPHN PGVSHPYSIA PQTHYPLNMN PIPQMPQMPQ
421 MPPPLHQGYG MNGPSCSSEN NNPFHQNHHY NDISHPNHYS YDCGPNLYGF PTPYPDFHHP
481 FNQQPHQPPQ LSQNHTSQQG SHQPGHQGQV PNDPPISRPV LQPSTVTLDV FRRYCRQTFG
541 NRFFEGESEQ SGAIIRSSNK FIEEFDSPIC GVTVVRPRMT DGEVLENIMP EDAPYHDICK
601 FILRLTSESV TFSGEGPEVS DLNEKWGTIV YYEKNLQIGE KKCSRGNFHV DGGFICSENR
661 YSLGLEPNPI REPVAFKVRK AIVDGIRFSY KKDGSVWLQN RMKYPVFVTS GYLDEQSGGL
721 KKDKVHKVYG CASIKTFGFN VSKQIIRDAL LSKQMATMYL QGKLTPMNYI YEKKTQEELR
781 REATRTTDSL AKYCCVRVSF CKGFGEAYPE RPSIHDCPVW IELKINIAYD FMDSICQYIT
841 NCFEPLGMED FAKLGINVSD D
//