LOCUS       CTQ87052.1               895 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Smad protein daf-3 protein.
ACCESSION   BX284606-175
PROTEIN_ID  CTQ87052.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="daf-3"
                     /locus_tag="CELE_F25E2.5"
                     /standard_name="F25E2.5d"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00000899"
                     /db_xref="EnsemblGenomes-Tr:F25E2.5d"
                     /db_xref="GOA:A0A0K3AVK9"
                     /db_xref="InterPro:IPR001132"
                     /db_xref="InterPro:IPR003619"
                     /db_xref="InterPro:IPR008984"
                     /db_xref="InterPro:IPR013019"
                     /db_xref="InterPro:IPR013790"
                     /db_xref="InterPro:IPR017855"
                     /db_xref="InterPro:IPR036578"
                     /db_xref="UniProtKB/TrEMBL:A0A0K3AVK9"
                     /db_xref="WormBase:WBGene00000899"
     intron_pos      9:1 (1/14)
     intron_pos      72:1 (2/14)
     intron_pos      106:1 (3/14)
     intron_pos      158:1 (4/14)
     intron_pos      209:0 (5/14)
     intron_pos      289:0 (6/14)
     intron_pos      334:0 (7/14)
     intron_pos      554:1 (8/14)
     intron_pos      598:0 (9/14)
     intron_pos      638:2 (10/14)
     intron_pos      656:1 (11/14)
     intron_pos      713:2 (12/14)
     intron_pos      816:0 (13/14)
     intron_pos      861:2 (14/14)
BEGIN
        1 MGDHHNLTGL PGTSIPPQFN YSQPGTSTGG PLYGGKPSHG LEDIPDVEEY ERNLLGAGAG
       61 FNLLNVGNMA NEFKPIITLD TKPPRDANKS LAFNGGLKLI TPKTEVPDEH TPMMSPVNTT
      121 TKILQRSGIK MEIPPYLDPD SQDDDPEDGV NYPDPDLFDT KNTNMTEYDL DVLKLGKPAV
      181 DEARKKIEVP DASAPPNKIV EYLMYYRTLK ESELIQLNAY RTKRNRLSLN LVKNNIDREF
      241 DQKACESLVK KLKDKKNDLQ NLIDVVLSKG TKYTGCITIP RTLDGRLQVH GRKGFPHVVY
      301 GKLWRFNEMT KNETRHVDHC KHAFEMKSDM VGEVCVNPYH YEIVIGTMIV GQRDHDNRDM
      361 PPPHQRYHTP GRQDPVDDMS RFIPPASIRP PPMNMHTRPQ PMPQQLPSVG ATFAHPLPHQ
      421 APHNPGVSHP YSIAPQTHYP LNMNPIPQMP QMPQMPPPLH QGYGMNGPSC SSENNNPFHQ
      481 NHHYNDISHP NHYSYDCGPN LYGFPTPYPD FHHPFNQQPH QPPQLSQNHT SQQGSHQPGH
      541 QGQVPNDPPI SRPVLQPSTV TLDVFRRYCR QTFGNRFFEG ESEQSGAIIR SSNKFIEEFD
      601 SPICGVTVVR PRMTDGEVLE NIMPEDAPYH DICKFILRLT SESVTFSGEG PEVSDLNEKW
      661 GTIVYYEKNL QIGEKKCSRG NFHVDGGFIC SENRYSLGLE PNPIREPVAF KVRKAIVDGI
      721 RFSYKKDGSV WLQNRMKYPV FVTSGYLDEQ SGGLKKDKVH KVYGCASIKT FGFNVSKQII
      781 RDALLSKQMA TMYLQGKLTP MNYIYEKKTQ EELRREATRT TDSLAKYCCV RVSFCKGFGE
      841 AYPERPSIHD CPVWIELKIN IAYDFMDSIC QYITNCFEPL GMEDFAKLGI NVSDD
//