LOCUS CTQ87038.1 2720 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Calponin-homology (CH) domain-containing
protein protein.
ACCESSION BX284606-2193
PROTEIN_ID CTQ87038.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="fln-2"
/locus_tag="CELE_C23F12.1"
/standard_name="C23F12.1l"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00016006"
/db_xref="InterPro:IPR001298"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR014756"
/db_xref="InterPro:IPR017868"
/db_xref="UniProtKB/TrEMBL:A0A0K3ASN4"
/db_xref="WormBase:WBGene00016006"
intron_pos 28:0 (1/31)
intron_pos 63:2 (2/31)
intron_pos 155:1 (3/31)
intron_pos 179:1 (4/31)
intron_pos 209:2 (5/31)
intron_pos 235:1 (6/31)
intron_pos 267:1 (7/31)
intron_pos 326:0 (8/31)
intron_pos 392:2 (9/31)
intron_pos 423:2 (10/31)
intron_pos 967:1 (11/31)
intron_pos 1052:1 (12/31)
intron_pos 1113:1 (13/31)
intron_pos 1181:0 (14/31)
intron_pos 1223:1 (15/31)
intron_pos 1297:1 (16/31)
intron_pos 1353:1 (17/31)
intron_pos 1390:1 (18/31)
intron_pos 1478:1 (19/31)
intron_pos 1638:1 (20/31)
intron_pos 1665:1 (21/31)
intron_pos 1706:1 (22/31)
intron_pos 1943:1 (23/31)
intron_pos 1992:1 (24/31)
intron_pos 2067:1 (25/31)
intron_pos 2126:1 (26/31)
intron_pos 2264:1 (27/31)
intron_pos 2303:2 (28/31)
intron_pos 2352:2 (29/31)
intron_pos 2571:2 (30/31)
intron_pos 2627:0 (31/31)
BEGIN
1 MINGGRVPCR VRELGSRQYM AIFTPTQSMT HTIEMRFNGE HVSGSPWKLP VEDRGERRQE
61 MERTMSYYSE LSGPGLVRAP VNRTAQFDIT GEGLELSDIQ AKISGPDNRE YPIRIIPRSS
121 GKYTAEYEIE QVGEHHLTVW IAGRKVDGSP LSVAGYATEK VRLEPLGGGV PKQPVQFYVD
181 AVEAGKGQLE ISVNQGKVPN NVQMQGAGRC LVTFIPQHAG TYVIDVTFNG EQVHGCPIKV
241 EILPKQVGQQ IHANLTPTAV STAISAGGTS LISGAFRETA RSPLSARSPT SPTLLQHARQ
301 RSEETMLRSP QLLRESRKAD KPWQSSYAPS SSRNAFSQSP HRDWSASTVY DRVYNSNSDV
361 ERTLSPSDPS RNRNIRETTT VIHRTPSPTG LRSTQITETI TRTTHRSPSP PRGVSNTSFG
421 SVRTQEFAER IARSPSPTGY EREFVEKRTT YRSPSPARTS SVAHSHISEV PLSPIQGMDT
481 PFDHHERVKK VERMDPLADE EEREQRRNQL ERDSKNTLGY TVAQYGDGEK RYFGDTLEKK
541 DRPPSAGYYS SVQQRSTSPE YSTVYERYDR KSEKPDLPPR VEGHVSASYK GYEPVYSEVT
601 TTRTTTTTEY ENIDKKPNVP KKRATTPEGH VEPVNDNEEK DRQAFLRTQS EKVFEPVDAP
661 LRRSDEKESI YDLPPQERLH KYPEEPTIAL GEKANTSAIA AYTKGRQDDI DEVSRNASFP
721 SAPTINYNER SDEVSNYNRT KEDHYGVVGE YPTAPKIAYS DSKEAVIREH YAQAKEDPYA
781 TVGECPPAPE ISLRSDKLNE TKNEYRRTTD SDQQDGKAGP PPPVIEISKA EQARRTEEYL
841 RVKSEDDKIL AKHGFTRKPE PSIEIQEPVT EQIRDDVVET AIAPEVPLRP VEELPHSPAP
901 SSRSTPATTP KLSAKFRKDG KEGKPFDFGK SKFVCKHDVI KRGKEVEVKL EGIKLGKEDQ
961 LRVVVLPPAN KAIPGANGGP PTEVDTKVKK SSSKYEISFK PTEVGTHKVF AYVNDMQHPL
1021 SPFAVRVYDA SEIIVGEIPN QSNLNDTVEF TVDAGRAGFG NLEMAIKDAD GVIIPSHVAQ
1081 LESGSAKFLV TFTPATKGPH TVNITFNKEV LKNSPFEVNI VDAPLPAPVV LEPASGASAV
1141 ASPSLSKKEL KEQEKEKKRE EKERAKREKE ERATLKKEKK SKSHRFPAKT TVSKIPSLSR
1201 VGQPSSLVVE VSGHDQLEIR VLDSKKSEIG TDIVEIEPGH MQINFTPAQV GDHEIDVRYG
1261 GVPVTGSPFT CRAYDPAKIK VGAIPKGLLD KPVYFTVDAS EAGVGNLEVA VCEGRVPSMA
1321 HALGHHKYDI SFVPKEDVDH TITVRFNNEP VPGSPFLCQL VATAQATATG AGLERIPVDE
1381 ETEIQILTDE IDSAPEARVR DPQGNDLPVN VTRSRENETL HIATYVPKCV GNHLIDIFLQ
1441 GEPIAGSPFT AKAYDARKTV LVPPANAVVG KPATFVIDAA RSGAGNMEII VSVDNRNVPN
1501 FVQAEGQARF KVSFTPQDAK DHTISVKFNG ISVPGSPLIC SVSSAGSVPA AVVLPAAAVI
1561 GAETAVAARE RIKHTPQHSS EQIKQTTTTV LQKTPEIRET VEKTGLAREL NSAQIGQKKG
1621 FTIDNINKSS DCNVIITAPD GSMVPVSIQK SSTSAYAEFT PTITGEHLVE IYLDHEIIDE
1681 FVIKIKDERH ILPPVCLAGQ KYSFDVNSDD KNKVRVTIRE PSGRMLPVQM EDLPDGGVRV
1741 SCRFKEVGIH SIDVFVDDQP IGERKMQTVI DPLNGAQLVS EPKREIVGEQ TELKILIDSG
1801 VESQVEVIIE GPDREDNEVF VKKVSETLWS AVWTPKVEGE HELSILVAGE QIPGSPFPIH
1861 VLDPSAVRVI GLKNAPVGVE QQFSVDYTNS GASIASVEVR HGDQTIPITV KKMKPGQLLC
1921 TFTPFVDGPH QVEVIIDGVP LSDGPYEVFI SHLGTVRASG DALRKAQRAR TARFEVINVE
1981 QNRGELDVMV SDPKGGPLPV RCYKQQDDSY WVEFTPEHLG THTIEVTFGD VPVPGSPFKT
2041 EVIDPKNVEI RGLSDQVLLR HATTINVDRR NAGNGELQVE ITDPTGSPLR TEMLKSPGGE
2101 DRITFLPNQT GPHKINVKVA GFQIPGYPQT ILVSEQEKPA VYGAAVDQSI KIGEPASLIF
2161 DPKKTNGGLK IHATGPDGQK VHHNVMRRPN GTSEVVFYPE ETGTYNVSID FNNRPITGSP
2221 FTVNVVDPTK VIVNDLDMDR DGTLLLRLGH SNSFDVDATA AGPGKLRAEV RDADSSLIGN
2281 GPVVEDMGQG KYRVRFNPDQ PGKYSIYLYW NELPVESAFP VRARSSAEDL PTTSRAVREP
2341 IPPPVTTTYH TREKSSGSNA DDEISRIMVR GDGLHRAVLK EHNEFIIDGS DINKEGRITA
2401 TLLGSKADIP VRIQQLGHNV YKATYTPLTG GTYELHILWN GKHVKGSPFA VSADTSAHLA
2461 DLIDVDASTL KIGIINENIK TLIDTRRAGS GQLSALCMGP NKPAYCELYD HRDGTYALCV
2521 RPAEIGKHTL VIKYDDEHVK GSPFVVHVSL PPDPSKVRVY GPGVEHGILS LFKSNFVVET
2581 RGAGAGQLTV RVRGPKGAFN VEMQREKKNE RTIHCKYEPK EPGDYQVEVK WHGEHVPGSP
2641 FLVMIVDTEK ELSRYLRGEA PSPTPATPFI PPGWVAPPQM YPMQPGQQRF LPPPGHFGPM
2701 GVPSPYGSVP PPTKHKGRNH
//