LOCUS CTQ87036.1 2864 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Calponin-homology (CH) domain-containing
protein protein.
ACCESSION BX284606-2189
PROTEIN_ID CTQ87036.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="fln-2"
/locus_tag="CELE_C23F12.1"
/standard_name="C23F12.1j"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00016006"
/db_xref="EnsemblGenomes-Tr:C23F12.1h"
/db_xref="EnsemblGenomes-Tr:C23F12.1j"
/db_xref="InterPro:IPR001298"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR014756"
/db_xref="InterPro:IPR017868"
/db_xref="UniProtKB/TrEMBL:A0A0K3AT80"
/db_xref="WormBase:WBGene00016006"
intron_pos 5:1 (1/35)
intron_pos 54:1 (2/35)
intron_pos 82:1 (3/35)
intron_pos 132:1 (4/35)
intron_pos 172:0 (5/35)
intron_pos 207:2 (6/35)
intron_pos 299:1 (7/35)
intron_pos 323:1 (8/35)
intron_pos 353:2 (9/35)
intron_pos 379:1 (10/35)
intron_pos 411:1 (11/35)
intron_pos 470:0 (12/35)
intron_pos 536:2 (13/35)
intron_pos 567:2 (14/35)
intron_pos 1111:1 (15/35)
intron_pos 1196:1 (16/35)
intron_pos 1257:1 (17/35)
intron_pos 1325:0 (18/35)
intron_pos 1367:1 (19/35)
intron_pos 1441:1 (20/35)
intron_pos 1497:1 (21/35)
intron_pos 1534:1 (22/35)
intron_pos 1622:1 (23/35)
intron_pos 1782:1 (24/35)
intron_pos 1809:1 (25/35)
intron_pos 1850:1 (26/35)
intron_pos 2087:1 (27/35)
intron_pos 2136:1 (28/35)
intron_pos 2211:1 (29/35)
intron_pos 2270:1 (30/35)
intron_pos 2408:1 (31/35)
intron_pos 2447:2 (32/35)
intron_pos 2496:2 (33/35)
intron_pos 2715:2 (34/35)
intron_pos 2771:0 (35/35)
BEGIN
1 MEIKGSPFIL DIADASSVSV YGENLRSASV GKTASFMVHA IGAEAKDISA HVTVPSGGKF
61 PAKVVTLDDV TFQIEWTPKE PGEHSVDVML ADQRVPDAPF ACNVGAPDLV HVRNMPRRIQ
121 PSKLHTDHSF EIDASAAGSG NLEIMINGGR VPCRVRELGS RQYMAIFTPT QSMTHTIEMR
181 FNGEHVSGSP WKLPVEDRGE RRQEMERTMS YYSELSGPGL VRAPVNRTAQ FDITGEGLEL
241 SDIQAKISGP DNREYPIRII PRSSGKYTAE YEIEQVGEHH LTVWIAGRKV DGSPLSVAGY
301 ATEKVRLEPL GGGVPKQPVQ FYVDAVEAGK GQLEISVNQG KVPNNVQMQG AGRCLVTFIP
361 QHAGTYVIDV TFNGEQVHGC PIKVEILPKQ VGQQIHANLT PTAVSTAISA GGTSLISGAF
421 RETARSPLSA RSPTSPTLLQ HARQRSEETM LRSPQLLRES RKADKPWQSS YAPSSSRNAF
481 SQSPHRDWSA STVYDRVYNS NSDVERTLSP SDPSRNRNIR ETTTVIHRTP SPTGLRSTQI
541 TETITRTTHR SPSPPRGVSN TSFGSVRTQE FAERIARSPS PTGYEREFVE KRTTYRSPSP
601 ARTSSVAHSH ISEVPLSPIQ GMDTPFDHHE RVKKVERMDP LADEEEREQR RNQLERDSKN
661 TLGYTVAQYG DGEKRYFGDT LEKKDRPPSA GYYSSVQQRS TSPEYSTVYE RYDRKSEKPD
721 LPPRVEGHVS ASYKGYEPVY SEVTTTRTTT TTEYENIDKK PNVPKKRATT PEGHVEPVND
781 NEEKDRQAFL RTQSEKVFEP VDAPLRRSDE KESIYDLPPQ ERLHKYPEEP TIALGEKANT
841 SAIAAYTKGR QDDIDEVSRN ASFPSAPTIN YNERSDEVSN YNRTKEDHYG VVGEYPTAPK
901 IAYSDSKEAV IREHYAQAKE DPYATVGECP PAPEISLRSD KLNETKNEYR RTTDSDQQDG
961 KAGPPPPVIE ISKAEQARRT EEYLRVKSED DKILAKHGFT RKPEPSIEIQ EPVTEQIRDD
1021 VVETAIAPEV PLRPVEELPH SPAPSSRSTP ATTPKLSAKF RKDGKEGKPF DFGKSKFVCK
1081 HDVIKRGKEV EVKLEGIKLG KEDQLRVVVL PPANKAIPGA NGGPPTEVDT KVKKSSSKYE
1141 ISFKPTEVGT HKVFAYVNDM QHPLSPFAVR VYDASEIIVG EIPNQSNLND TVEFTVDAGR
1201 AGFGNLEMAI KDADGVIIPS HVAQLESGSA KFLVTFTPAT KGPHTVNITF NKEVLKNSPF
1261 EVNIVDAPLP APVVLEPASG ASAVASPSLS KKELKEQEKE KKREEKERAK REKEERATLK
1321 KEKKSKSHRF PAKTTVSKIP SLSRVGQPSS LVVEVSGHDQ LEIRVLDSKK SEIGTDIVEI
1381 EPGHMQINFT PAQVGDHEID VRYGGVPVTG SPFTCRAYDP AKIKVGAIPK GLLDKPVYFT
1441 VDASEAGVGN LEVAVCEGRV PSMAHALGHH KYDISFVPKE DVDHTITVRF NNEPVPGSPF
1501 LCQLVATAQA TATGAGLERI PVDEETEIQI LTDEIDSAPE ARVRDPQGND LPVNVTRSRE
1561 NETLHIATYV PKCVGNHLID IFLQGEPIAG SPFTAKAYDA RKTVLVPPAN AVVGKPATFV
1621 IDAARSGAGN MEIIVSVDNR NVPNFVQAEG QARFKVSFTP QDAKDHTISV KFNGISVPGS
1681 PLICSVSSAG SVPAAVVLPA AAVIGAETAV AARERIKHTP QHSSEQIKQT TTTVLQKTPE
1741 IRETVEKTGL ARELNSAQIG QKKGFTIDNI NKSSDCNVII TAPDGSMVPV SIQKSSTSAY
1801 AEFTPTITGE HLVEIYLDHE IIDEFVIKIK DERHILPPVC LAGQKYSFDV NSDDKNKVRV
1861 TIREPSGRML PVQMEDLPDG GVRVSCRFKE VGIHSIDVFV DDQPIGERKM QTVIDPLNGA
1921 QLVSEPKREI VGEQTELKIL IDSGVESQVE VIIEGPDRED NEVFVKKVSE TLWSAVWTPK
1981 VEGEHELSIL VAGEQIPGSP FPIHVLDPSA VRVIGLKNAP VGVEQQFSVD YTNSGASIAS
2041 VEVRHGDQTI PITVKKMKPG QLLCTFTPFV DGPHQVEVII DGVPLSDGPY EVFISHLGTV
2101 RASGDALRKA QRARTARFEV INVEQNRGEL DVMVSDPKGG PLPVRCYKQQ DDSYWVEFTP
2161 EHLGTHTIEV TFGDVPVPGS PFKTEVIDPK NVEIRGLSDQ VLLRHATTIN VDRRNAGNGE
2221 LQVEITDPTG SPLRTEMLKS PGGEDRITFL PNQTGPHKIN VKVAGFQIPG YPQTILVSEQ
2281 EKPAVYGAAV DQSIKIGEPA SLIFDPKKTN GGLKIHATGP DGQKVHHNVM RRPNGTSEVV
2341 FYPEETGTYN VSIDFNNRPI TGSPFTVNVV DPTKVIVNDL DMDRDGTLLL RLGHSNSFDV
2401 DATAAGPGKL RAEVRDADSS LIGNGPVVED MGQGKYRVRF NPDQPGKYSI YLYWNELPVE
2461 SAFPVRARSS AEDLPTTSRA VREPIPPPVT TTYHTREKSS GSNADDEISR IMVRGDGLHR
2521 AVLKEHNEFI IDGSDINKEG RITATLLGSK ADIPVRIQQL GHNVYKATYT PLTGGTYELH
2581 ILWNGKHVKG SPFAVSADTS AHLADLIDVD ASTLKIGIIN ENIKTLIDTR RAGSGQLSAL
2641 CMGPNKPAYC ELYDHRDGTY ALCVRPAEIG KHTLVIKYDD EHVKGSPFVV HVSLPPDPSK
2701 VRVYGPGVEH GILSLFKSNF VVETRGAGAG QLTVRVRGPK GAFNVEMQRE KKNERTIHCK
2761 YEPKEPGDYQ VEVKWHGEHV PGSPFLVMIV DTEKELSRYL RGEAPSPTPA TPFIPPGWVA
2821 PPQMYPMQPG QQRFLPPPGH FGPMGVPSPY GSVPPPTKHK GRNH
//