LOCUS CTQ87034.1 3039 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Calponin-homology (CH) domain-containing
protein protein.
ACCESSION BX284606-2187
PROTEIN_ID CTQ87034.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="fln-2"
/locus_tag="CELE_C23F12.1"
/standard_name="C23F12.1h"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00016006"
/db_xref="InterPro:IPR001298"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR014756"
/db_xref="InterPro:IPR017868"
/db_xref="UniProtKB/TrEMBL:A0A0K3AW96"
/db_xref="WormBase:WBGene00016006"
intron_pos 31:0 (1/39)
intron_pos 75:1 (2/39)
intron_pos 97:0 (3/39)
intron_pos 133:0 (4/39)
intron_pos 180:1 (5/39)
intron_pos 229:1 (6/39)
intron_pos 257:1 (7/39)
intron_pos 307:1 (8/39)
intron_pos 347:0 (9/39)
intron_pos 382:2 (10/39)
intron_pos 474:1 (11/39)
intron_pos 498:1 (12/39)
intron_pos 528:2 (13/39)
intron_pos 554:1 (14/39)
intron_pos 586:1 (15/39)
intron_pos 645:0 (16/39)
intron_pos 711:2 (17/39)
intron_pos 742:2 (18/39)
intron_pos 1286:1 (19/39)
intron_pos 1371:1 (20/39)
intron_pos 1432:1 (21/39)
intron_pos 1500:0 (22/39)
intron_pos 1542:1 (23/39)
intron_pos 1616:1 (24/39)
intron_pos 1672:1 (25/39)
intron_pos 1709:1 (26/39)
intron_pos 1797:1 (27/39)
intron_pos 1957:1 (28/39)
intron_pos 1984:1 (29/39)
intron_pos 2025:1 (30/39)
intron_pos 2262:1 (31/39)
intron_pos 2311:1 (32/39)
intron_pos 2386:1 (33/39)
intron_pos 2445:1 (34/39)
intron_pos 2583:1 (35/39)
intron_pos 2622:2 (36/39)
intron_pos 2671:2 (37/39)
intron_pos 2890:2 (38/39)
intron_pos 2946:0 (39/39)
BEGIN
1 MPLTRSPDVG LVSFSGLTEP CSVGSIVEVV INAHGDAVSG SVYVEAVSPS GNVHRCTVRH
61 QDNSYMATFT PQEVGLWRIG ILYDGEHIRG SPFACQVFDS GLVNVYGLDV GLVGQELNFS
121 VNASQAGHGN LSVTVFRHGR EIPLSIEEQG SSKVHQVSFT PDGAGQYKIH VLFNRMEIKG
181 SPFILDIADA SSVSVYGENL RSASVGKTAS FMVHAIGAEA KDISAHVTVP SGGKFPAKVV
241 TLDDVTFQIE WTPKEPGEHS VDVMLADQRV PDAPFACNVG APDLVHVRNM PRRIQPSKLH
301 TDHSFEIDAS AAGSGNLEIM INGGRVPCRV RELGSRQYMA IFTPTQSMTH TIEMRFNGEH
361 VSGSPWKLPV EDRGERRQEM ERTMSYYSEL SGPGLVRAPV NRTAQFDITG EGLELSDIQA
421 KISGPDNREY PIRIIPRSSG KYTAEYEIEQ VGEHHLTVWI AGRKVDGSPL SVAGYATEKV
481 RLEPLGGGVP KQPVQFYVDA VEAGKGQLEI SVNQGKVPNN VQMQGAGRCL VTFIPQHAGT
541 YVIDVTFNGE QVHGCPIKVE ILPKQVGQQI HANLTPTAVS TAISAGGTSL ISGAFRETAR
601 SPLSARSPTS PTLLQHARQR SEETMLRSPQ LLRESRKADK PWQSSYAPSS SRNAFSQSPH
661 RDWSASTVYD RVYNSNSDVE RTLSPSDPSR NRNIRETTTV IHRTPSPTGL RSTQITETIT
721 RTTHRSPSPP RGVSNTSFGS VRTQEFAERI ARSPSPTGYE REFVEKRTTY RSPSPARTSS
781 VAHSHISEVP LSPIQGMDTP FDHHERVKKV ERMDPLADEE EREQRRNQLE RDSKNTLGYT
841 VAQYGDGEKR YFGDTLEKKD RPPSAGYYSS VQQRSTSPEY STVYERYDRK SEKPDLPPRV
901 EGHVSASYKG YEPVYSEVTT TRTTTTTEYE NIDKKPNVPK KRATTPEGHV EPVNDNEEKD
961 RQAFLRTQSE KVFEPVDAPL RRSDEKESIY DLPPQERLHK YPEEPTIALG EKANTSAIAA
1021 YTKGRQDDID EVSRNASFPS APTINYNERS DEVSNYNRTK EDHYGVVGEY PTAPKIAYSD
1081 SKEAVIREHY AQAKEDPYAT VGECPPAPEI SLRSDKLNET KNEYRRTTDS DQQDGKAGPP
1141 PPVIEISKAE QARRTEEYLR VKSEDDKILA KHGFTRKPEP SIEIQEPVTE QIRDDVVETA
1201 IAPEVPLRPV EELPHSPAPS SRSTPATTPK LSAKFRKDGK EGKPFDFGKS KFVCKHDVIK
1261 RGKEVEVKLE GIKLGKEDQL RVVVLPPANK AIPGANGGPP TEVDTKVKKS SSKYEISFKP
1321 TEVGTHKVFA YVNDMQHPLS PFAVRVYDAS EIIVGEIPNQ SNLNDTVEFT VDAGRAGFGN
1381 LEMAIKDADG VIIPSHVAQL ESGSAKFLVT FTPATKGPHT VNITFNKEVL KNSPFEVNIV
1441 DAPLPAPVVL EPASGASAVA SPSLSKKELK EQEKEKKREE KERAKREKEE RATLKKEKKS
1501 KSHRFPAKTT VSKIPSLSRV GQPSSLVVEV SGHDQLEIRV LDSKKSEIGT DIVEIEPGHM
1561 QINFTPAQVG DHEIDVRYGG VPVTGSPFTC RAYDPAKIKV GAIPKGLLDK PVYFTVDASE
1621 AGVGNLEVAV CEGRVPSMAH ALGHHKYDIS FVPKEDVDHT ITVRFNNEPV PGSPFLCQLV
1681 ATAQATATGA GLERIPVDEE TEIQILTDEI DSAPEARVRD PQGNDLPVNV TRSRENETLH
1741 IATYVPKCVG NHLIDIFLQG EPIAGSPFTA KAYDARKTVL VPPANAVVGK PATFVIDAAR
1801 SGAGNMEIIV SVDNRNVPNF VQAEGQARFK VSFTPQDAKD HTISVKFNGI SVPGSPLICS
1861 VSSAGSVPAA VVLPAAAVIG AETAVAARER IKHTPQHSSE QIKQTTTTVL QKTPEIRETV
1921 EKTGLARELN SAQIGQKKGF TIDNINKSSD CNVIITAPDG SMVPVSIQKS STSAYAEFTP
1981 TITGEHLVEI YLDHEIIDEF VIKIKDERHI LPPVCLAGQK YSFDVNSDDK NKVRVTIREP
2041 SGRMLPVQME DLPDGGVRVS CRFKEVGIHS IDVFVDDQPI GERKMQTVID PLNGAQLVSE
2101 PKREIVGEQT ELKILIDSGV ESQVEVIIEG PDREDNEVFV KKVSETLWSA VWTPKVEGEH
2161 ELSILVAGEQ IPGSPFPIHV LDPSAVRVIG LKNAPVGVEQ QFSVDYTNSG ASIASVEVRH
2221 GDQTIPITVK KMKPGQLLCT FTPFVDGPHQ VEVIIDGVPL SDGPYEVFIS HLGTVRASGD
2281 ALRKAQRART ARFEVINVEQ NRGELDVMVS DPKGGPLPVR CYKQQDDSYW VEFTPEHLGT
2341 HTIEVTFGDV PVPGSPFKTE VIDPKNVEIR GLSDQVLLRH ATTINVDRRN AGNGELQVEI
2401 TDPTGSPLRT EMLKSPGGED RITFLPNQTG PHKINVKVAG FQIPGYPQTI LVSEQEKPAV
2461 YGAAVDQSIK IGEPASLIFD PKKTNGGLKI HATGPDGQKV HHNVMRRPNG TSEVVFYPEE
2521 TGTYNVSIDF NNRPITGSPF TVNVVDPTKV IVNDLDMDRD GTLLLRLGHS NSFDVDATAA
2581 GPGKLRAEVR DADSSLIGNG PVVEDMGQGK YRVRFNPDQP GKYSIYLYWN ELPVESAFPV
2641 RARSSAEDLP TTSRAVREPI PPPVTTTYHT REKSSGSNAD DEISRIMVRG DGLHRAVLKE
2701 HNEFIIDGSD INKEGRITAT LLGSKADIPV RIQQLGHNVY KATYTPLTGG TYELHILWNG
2761 KHVKGSPFAV SADTSAHLAD LIDVDASTLK IGIINENIKT LIDTRRAGSG QLSALCMGPN
2821 KPAYCELYDH RDGTYALCVR PAEIGKHTLV IKYDDEHVKG SPFVVHVSLP PDPSKVRVYG
2881 PGVEHGILSL FKSNFVVETR GAGAGQLTVR VRGPKGAFNV EMQREKKNER TIHCKYEPKE
2941 PGDYQVEVKW HGEHVPGSPF LVMIVDTEKE LSRYLRGEAP SPTPATPFIP PGWVAPPQMY
3001 PMQPGQQRFL PPPGHFGPMG VPSPYGSVPP PTKHKGRNH
//