LOCUS CTQ87033.1 1889 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Calponin-homology (CH) domain-containing
protein protein.
ACCESSION BX284606-2200
PROTEIN_ID CTQ87033.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="fln-2"
/locus_tag="CELE_C23F12.1"
/standard_name="C23F12.1g"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00016006"
/db_xref="EnsemblGenomes-Tr:C23F12.1g"
/db_xref="EnsemblGenomes-Tr:C23F12.1q"
/db_xref="InterPro:IPR001298"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR014756"
/db_xref="InterPro:IPR017868"
/db_xref="UniProtKB/TrEMBL:A0A0K3ASM8"
/db_xref="WormBase:WBGene00016006"
intron_pos 490:1 (1/17)
intron_pos 575:1 (2/17)
intron_pos 636:1 (3/17)
intron_pos 704:0 (4/17)
intron_pos 746:1 (5/17)
intron_pos 820:1 (6/17)
intron_pos 876:1 (7/17)
intron_pos 913:1 (8/17)
intron_pos 1001:1 (9/17)
intron_pos 1161:1 (10/17)
intron_pos 1236:1 (11/17)
intron_pos 1295:1 (12/17)
intron_pos 1433:1 (13/17)
intron_pos 1472:2 (14/17)
intron_pos 1521:2 (15/17)
intron_pos 1740:2 (16/17)
intron_pos 1796:0 (17/17)
BEGIN
1 MDTPFDHHER VKKVERMDPL ADEEEREQRR NQLERDSKNT LGYTVAQYGD GEKRYFGDTL
61 EKKDRPPSAG YYSSVQQRST SPEYSTVYER YDRKSEKPDL PPRVEGHVSA SYKGYEPVYS
121 EVTTTRTTTT TEYENIDKKP NVPKKRATTP EGHVEPVNDN EEKDRQAFLR TQSEKVFEPV
181 DAPLRRSDEK ESIYDLPPQE RLHKYPEEPT IALGEKANTS AIAAYTKGRQ DDIDEVSRNA
241 SFPSAPTINY NERSDEVSNY NRTKEDHYGV VGEYPTAPKI AYSDSKEAVI REHYAQAKED
301 PYATVGECPP APEISLRSDK LNETKNEYRR TTDSDQQDGK AGPPPPVIEI SKAEQARRTE
361 EYLRVKSEDD KILAKHGFTR KPEPSIEIQE PVTEQIRDDV VETAIAPEVP LRPVEELPHS
421 PAPSSRSTPA TTPKLSAKFR KDGKEGKPFD FGKSKFVCKH DVIKRGKEVE VKLEGIKLGK
481 EDQLRVVVLP PANKAIPGAN GGPPTEVDTK VKKSSSKYEI SFKPTEVGTH KVFAYVNDMQ
541 HPLSPFAVRV YDASEIIVGE IPNQSNLNDT VEFTVDAGRA GFGNLEMAIK DADGVIIPSH
601 VAQLESGSAK FLVTFTPATK GPHTVNITFN KEVLKNSPFE VNIVDAPLPA PVVLEPASGA
661 SAVASPSLSK KELKEQEKEK KREEKERAKR EKEERATLKK EKKSKSHRFP AKTTVSKIPS
721 LSRVGQPSSL VVEVSGHDQL EIRVLDSKKS EIGTDIVEIE PGHMQINFTP AQVGDHEIDV
781 RYGGVPVTGS PFTCRAYDPA KIKVGAIPKG LLDKPVYFTV DASEAGVGNL EVAVCEGRVP
841 SMAHALGHHK YDISFVPKED VDHTITVRFN NEPVPGSPFL CQLVATAQAT ATGAGLERIP
901 VDEETEIQIL TDEIDSAPEA RVRDPQGNDL PVNVTRSREN ETLHIATYVP KCVGNHLIDI
961 FLQGEPIAGS PFTAKAYDAR KTVLVPPANA VVGKPATFVI DAARSGAGNM EIIVSVDNRN
1021 VPNFVQAEGQ ARFKVSFTPQ DAKDHTISVK FNGISVPGSP LICSVSSAGS VPAAVVLPAA
1081 AVIGAETAVA ARERIKHTPQ HSSEQIKQTT TTVLQKTPEI RETVEKTGLA RELNSAQIGQ
1141 KKGFTIDNIN KSSDCNVIIT DPKGGPLPVR CYKQQDDSYW VEFTPEHLGT HTIEVTFGDV
1201 PVPGSPFKTE VIDPKNVEIR GLSDQVLLRH ATTINVDRRN AGNGELQVEI TDPTGSPLRT
1261 EMLKSPGGED RITFLPNQTG PHKINVKVAG FQIPGYPQTI LVSEQEKPAV YGAAVDQSIK
1321 IGEPASLIFD PKKTNGGLKI HATGPDGQKV HHNVMRRPNG TSEVVFYPEE TGTYNVSIDF
1381 NNRPITGSPF TVNVVDPTKV IVNDLDMDRD GTLLLRLGHS NSFDVDATAA GPGKLRAEVR
1441 DADSSLIGNG PVVEDMGQGK YRVRFNPDQP GKYSIYLYWN ELPVESAFPV RARSSAEDLP
1501 TTSRAVREPI PPPVTTTYHT REKSSGSNAD DEISRIMVRG DGLHRAVLKE HNEFIIDGSD
1561 INKEGRITAT LLGSKADIPV RIQQLGHNVY KATYTPLTGG TYELHILWNG KHVKGSPFAV
1621 SADTSAHLAD LIDVDASTLK IGIINENIKT LIDTRRAGSG QLSALCMGPN KPAYCELYDH
1681 RDGTYALCVR PAEIGKHTLV IKYDDEHVKG SPFVVHVSLP PDPSKVRVYG PGVEHGILSL
1741 FKSNFVVETR GAGAGQLTVR VRGPKGAFNV EMQREKKNER TIHCKYEPKE PGDYQVEVKW
1801 HGEHVPGSPF LVMIVDTEKE LSRYLRGEAP SPTPATPFIP PGWVAPPQMY PMQPGQQRFL
1861 PPPGHFGPMG VPSPYGSVPP PTKHKGRNH
//