LOCUS CTQ87031.2 3226 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Calponin-homology (CH) domain-containing
protein protein.
ACCESSION BX284606-2180
PROTEIN_ID CTQ87031.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="fln-2"
/locus_tag="CELE_C23F12.1"
/standard_name="C23F12.1e"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00016006"
/db_xref="EnsemblGenomes-Tr:C23F12.1e"
/db_xref="InterPro:IPR001298"
/db_xref="InterPro:IPR001715"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR014756"
/db_xref="InterPro:IPR017868"
/db_xref="InterPro:IPR036872"
/db_xref="UniProtKB/TrEMBL:A0A0K3AT74"
/db_xref="WormBase:WBGene00016006"
intron_pos 28:0 (1/45)
intron_pos 137:0 (2/45)
intron_pos 241:0 (3/45)
intron_pos 292:1 (4/45)
intron_pos 319:1 (5/45)
intron_pos 347:0 (6/45)
intron_pos 368:1 (7/45)
intron_pos 406:0 (8/45)
intron_pos 481:0 (9/45)
intron_pos 510:0 (10/45)
intron_pos 540:0 (11/45)
intron_pos 603:0 (12/45)
intron_pos 647:1 (13/45)
intron_pos 669:0 (14/45)
intron_pos 705:0 (15/45)
intron_pos 752:1 (16/45)
intron_pos 801:1 (17/45)
intron_pos 829:1 (18/45)
intron_pos 879:1 (19/45)
intron_pos 919:0 (20/45)
intron_pos 954:2 (21/45)
intron_pos 1046:1 (22/45)
intron_pos 1070:1 (23/45)
intron_pos 1100:2 (24/45)
intron_pos 1126:1 (25/45)
intron_pos 1158:1 (26/45)
intron_pos 1217:0 (27/45)
intron_pos 1283:2 (28/45)
intron_pos 1827:1 (29/45)
intron_pos 1912:1 (30/45)
intron_pos 1973:1 (31/45)
intron_pos 2041:0 (32/45)
intron_pos 2083:1 (33/45)
intron_pos 2157:1 (34/45)
intron_pos 2213:1 (35/45)
intron_pos 2250:1 (36/45)
intron_pos 2338:1 (37/45)
intron_pos 2498:1 (38/45)
intron_pos 2573:1 (39/45)
intron_pos 2632:1 (40/45)
intron_pos 2770:1 (41/45)
intron_pos 2809:2 (42/45)
intron_pos 2858:2 (43/45)
intron_pos 3077:2 (44/45)
intron_pos 3133:0 (45/45)
BEGIN
1 MGKQGEEARQ KWIDIQLHTF TNWINEQLQG NVIRDLTQDL SDGVNLIKLV EILQGRRYYG
61 KVYDQDPTEI QKLMNVQMAL DALREDGVKT VNIGSHDIVD GNEKLILGLI WCLVQRYQIA
121 CKTKIPPKKL VMAWIQSALP ELKLTNFRTN WNDGIALSAL LEYCQPGLCP EWRNLDPSEA
181 RENCHRALLL AERYLEVPPI ISSDHLSSPH LDELSCLTYL SYFITKGAPG YRATLKKVSM
241 LLPDCNVDDL EHSWSDGFLL AHLVEICGGR VPELERMRFD NLNDFVENVA IVLDAAADIG
301 VGSLIGADDI AEPQGEHLGT MALVAALCSV SLEQQVKYTD CYVNQQVNLD LAFTEGNEVR
361 IEELDVQVVG GNGQLYSNEA IKLRKSRTVQ GANLSLMPVE PGFLQVRIYC QGSELPASPI
421 SLQVHTQEET RSSSRAASRA HPENRNPPAS TSKYIERTIV SPVSDSRESG KIAQFSTETE
481 VDISHKSFAQ RRLHIIKQLE AQHVNHIAQT KSHHQQHTQQ QQHHQTVPTQ SSSIVQVVQP
541 IPPPPPTLAQ SSSNIPPPPP IPAVLEASAY REMPLTRSPD VGLVSFSGLT EPCSVGSIVE
601 VVINAHGDAV SGSVYVEAVS PSGNVHRCTV RHQDNSYMAT FTPQEVGLWR IGILYDGEHI
661 RGSPFACQVF DSGLVNVYGL DVGLVGQELN FSVNASQAGH GNLSVTVFRH GREIPLSIEE
721 QGSSKVHQVS FTPDGAGQYK IHVLFNRMEI KGSPFILDIA DASSVSVYGE NLRSASVGKT
781 ASFMVHAIGA EAKDISAHVT VPSGGKFPAK VVTLDDVTFQ IEWTPKEPGE HSVDVMLADQ
841 RVPDAPFACN VGAPDLVHVR NMPRRIQPSK LHTDHSFEID ASAAGSGNLE IMINGGRVPC
901 RVRELGSRQY MAIFTPTQSM THTIEMRFNG EHVSGSPWKL PVEDRGERRQ EMERTMSYYS
961 ELSGPGLVRA PVNRTAQFDI TGEGLELSDI QAKISGPDNR EYPIRIIPRS SGKYTAEYEI
1021 EQVGEHHLTV WIAGRKVDGS PLSVAGYATE KVRLEPLGGG VPKQPVQFYV DAVEAGKGQL
1081 EISVNQGKVP NNVQMQGAGR CLVTFIPQHA GTYVIDVTFN GEQVHGCPIK VEILPKQVGQ
1141 QIHANLTPTA VSTAISAGGT SLISGAFRET ARSPLSARSP TSPTLLQHAR QRSEETMLRS
1201 PQLLRESRKA DKPWQSSYAP SSSRNAFSQS PHRDWSASTV YDRVYNSNSD VERTLSPSDP
1261 SRNRNIRETT TVIHRTPSPT GLRTQEFAER IARSPSPTGY EREFVEKRTT YRSPSPARTS
1321 SVAHSHISEV PLSPIQGMDT PFDHHERVKK VERMDPLADE EEREQRRNQL ERDSKNTLGY
1381 TVAQYGDGEK RYFGDTLEKK DRPPSAGYYS SVQQRSTSPE YSTVYERYDR KSEKPDLPPR
1441 VEGHVSASYK GYEPVYSEVT TTRTTTTTEY ENIDKKPNVP KKRATTPEGH VEPVNDNEEK
1501 DRQAFLRTQS EKVFEPVDAP LRRSDEKESI YDLPPQERLH KYPEEPTIAL GEKANTSAIA
1561 AYTKGRQDDI DEVSRNASFP SAPTINYNER SDEVSNYNRT KEDHYGVVGE YPTAPKIAYS
1621 DSKEAVIREH YAQAKEDPYA TVGECPPAPE ISLRSDKLNE TKNEYRRTTD SDQQDGKAGP
1681 PPPVIEISKA EQARRTEEYL RVKSEDDKIL AKHGFTRKPE PSIEIQEPVT EQIRDDVVET
1741 AIAPEVPLRP VEELPHSPAP SSRSTPATTP KLSAKFRKDG KEGKPFDFGK SKFVCKHDVI
1801 KRGKEVEVKL EGIKLGKEDQ LRVVVLPPAN KAIPGANGGP PTEVDTKVKK SSSKYEISFK
1861 PTEVGTHKVF AYVNDMQHPL SPFAVRVYDA SEIIVGEIPN QSNLNDTVEF TVDAGRAGFG
1921 NLEMAIKDAD GVIIPSHVAQ LESGSAKFLV TFTPATKGPH TVNITFNKEV LKNSPFEVNI
1981 VDAPLPAPVV LEPASGASAV ASPSLSKKEL KEQEKEKKRE EKERAKREKE ERATLKKEKK
2041 SKSHRFPAKT TVSKIPSLSR VGQPSSLVVE VSGHDQLEIR VLDSKKSEIG TDIVEIEPGH
2101 MQINFTPAQV GDHEIDVRYG GVPVTGSPFT CRAYDPAKIK VGAIPKGLLD KPVYFTVDAS
2161 EAGVGNLEVA VCEGRVPSMA HALGHHKYDI SFVPKEDVDH TITVRFNNEP VPGSPFLCQL
2221 VATAQATATG AGLERIPVDE ETEIQILTDE IDSAPEARVR DPQGNDLPVN VTRSRENETL
2281 HIATYVPKCV GNHLIDIFLQ GEPIAGSPFT AKAYDARKTV LVPPANAVVG KPATFVIDAA
2341 RSGAGNMEII VSVDNRNVPN FVQAEGQARF KVSFTPQDAK DHTISVKFNG ISVPGSPLIC
2401 SVSSAGSVPA AVVLPAAAVI GAETAVAARE RIKHTPQHSS EQIKQTTTTV LQKTPEIRET
2461 VEKTGLAREL NSAQIGQKKG FTIDNINKSS DCNVIITDPK GGPLPVRCYK QQDDSYWVEF
2521 TPEHLGTHTI EVTFGDVPVP GSPFKTEVID PKNVEIRGLS DQVLLRHATT INVDRRNAGN
2581 GELQVEITDP TGSPLRTEML KSPGGEDRIT FLPNQTGPHK INVKVAGFQI PGYPQTILVS
2641 EQEKPAVYGA AVDQSIKIGE PASLIFDPKK TNGGLKIHAT GPDGQKVHHN VMRRPNGTSE
2701 VVFYPEETGT YNVSIDFNNR PITGSPFTVN VVDPTKVIVN DLDMDRDGTL LLRLGHSNSF
2761 DVDATAAGPG KLRAEVRDAD SSLIGNGPVV EDMGQGKYRV RFNPDQPGKY SIYLYWNELP
2821 VESAFPVRAR SSAEDLPTTS RAVREPIPPP VTTTYHTREK SSGSNADDEI SRIMVRGDGL
2881 HRAVLKEHNE FIIDGSDINK EGRITATLLG SKADIPVRIQ QLGHNVYKAT YTPLTGGTYE
2941 LHILWNGKHV KGSPFAVSAD TSAHLADLID VDASTLKIGI INENIKTLID TRRAGSGQLS
3001 ALCMGPNKPA YCELYDHRDG TYALCVRPAE IGKHTLVIKY DDEHVKGSPF VVHVSLPPDP
3061 SKVRVYGPGV EHGILSLFKS NFVVETRGAG AGQLTVRVRG PKGAFNVEMQ REKKNERTIH
3121 CKYEPKEPGD YQVEVKWHGE HVPGSPFLVM IVDTEKELSR YLRGEAPSPT PATPFIPPGW
3181 VAPPQMYPMQ PGQQRFLPPP GHFGPMGVPS PYGSVPPPTK HKGRNH
//