LOCUS CTQ87016.1 798 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Carboxylesterase type B domain-
containing protein protein.
ACCESSION BX284606-3265
PROTEIN_ID CTQ87016.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="nlg-1"
/locus_tag="CELE_C40C9.5"
/standard_name="C40C9.5f"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00006412"
/db_xref="EnsemblGenomes-Tr:C40C9.5f"
/db_xref="GOA:A0A0K3AT61"
/db_xref="InterPro:IPR002018"
/db_xref="InterPro:IPR029058"
/db_xref="UniProtKB/TrEMBL:A0A0K3AT61"
/db_xref="WormBase:WBGene00006412"
intron_pos 16:2 (1/14)
intron_pos 61:0 (2/14)
intron_pos 98:2 (3/14)
intron_pos 190:1 (4/14)
intron_pos 234:1 (5/14)
intron_pos 291:0 (6/14)
intron_pos 343:0 (7/14)
intron_pos 427:0 (8/14)
intron_pos 469:2 (9/14)
intron_pos 578:1 (10/14)
intron_pos 665:1 (11/14)
intron_pos 713:0 (12/14)
intron_pos 748:0 (13/14)
intron_pos 784:2 (14/14)
BEGIN
1 MERIYLLLLL FLPRIRSYDV RSVTTSWGMV RGEVVSPEGD DLPPVAQYLG IPYGVAPTGQ
61 YRFNMAISAA KWTHMPKDAR KVSPVCIQTD MPELSETKRF RAFKHTSAQR FDFNHRLLPH
121 LKKQSEDCLY MNIYVPERLE ISRDNYLPVM VIVHGEEYGW GTGNAFNGTT LAAYGHIIVV
181 TLNYRLGVFG FLGRCESSSC SGNSGISDLV SALTMLNVIL PSFGGDSKSV TLAGWGSGAS
241 LVSLLMASPL TQPGRRLFRR AILLDGSALS PWAISQNPQQ YFMQLAEELA CAPKNRTSSF
301 NDNVDTIVRC MQVHSSENIT KAVLKIDVPT FLSGFAPIVD GQLIPNKPQV SFSTQYGSLF
361 REIDLLVGIS SNPSHHMISN EDLKVGISKE KRMRIFRSLV RNLYDFHREE ILASIINEYT
421 DWENPRDHPK SIRNGVLNAL SDVLYTAPLI ETLRSHSADE VRKEANTFMF AFAHETRSWS
481 QEQPNSGIRG SLSGDIVPYI FGYPLAQGDS EERLYSGFNT DDKGISKVMM HYVSNFVKSG
541 DPSKPNPMSK NFPMGDVFHS TAWPQFDQPN REAYLEITDR PRVKNYYRNA QVGFWNNFIP
601 QLHKNGKETE PVGEEHHLLS DHFRKDSYFG KTRHFSSYAN LPFPPPPMPP SPPPELTTKP
661 KPSESPTTLQ TTTESEKAAA GSFTGKALGG VIFIGCGFLI MNVCLLIAVR REWGKKRRNE
721 KKFQLQYQTY NSNHGGGAEQ YNSLNSPEPL LSASHKNSTS MRPAGISPTC PRHGRAALAL
781 QNSRLTAAQA PTLEEIQV
//