LOCUS CTQ86499.1 480 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Transmembrane protein protein.
ACCESSION BX284602-2277
PROTEIN_ID CTQ86499.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="K06A1.2"
/locus_tag="CELE_K06A1.2"
/standard_name="K06A1.2a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00019425"
/db_xref="EnsemblGenomes-Tr:K06A1.2a"
/db_xref="GOA:A0A0K3AR25"
/db_xref="UniProtKB/TrEMBL:A0A0K3AR25"
/db_xref="WormBase:WBGene00019425"
intron_pos 12:2 (1/10)
intron_pos 83:1 (2/10)
intron_pos 167:0 (3/10)
intron_pos 203:0 (4/10)
intron_pos 232:0 (5/10)
intron_pos 288:0 (6/10)
intron_pos 356:0 (7/10)
intron_pos 381:2 (8/10)
intron_pos 407:0 (9/10)
intron_pos 428:2 (10/10)
BEGIN
1 MLKVIVFVLC SLSLSSGSSN QCINNQNGNN QCTSDICFSH FHATSEGDIE RFDCSQKPSK
61 LSTLSCAVLL NKTDESSVCL GDARDTHCCC TSSSSPKICA PEKRKMAELT QLWTMSQVWW
121 LVFGHVGLSC VVLLLVTFYM KSVKYLPKYN IVIPEESRMT TILWAKSLFL LLSLVTIYFP
181 FRKVCMKHPK GVFTTPRHFL YQIFDAGIGP SLYFSFPLIF FIFDFSLFIY VKDRKYINKF
241 GALFLAIFKL ITVPIFVYEC FLSTVCLWHK DHEPGYCRLN GAIWQFMLSH FFILVYHMLL
301 VIQTYLLSKL KPNIDPIPRI SEETPSQVAP TILSTQSGET RIESEFNEMT YIHPRPFHVP
361 RLGLSILNVK NNRNNDWLAL RALLSTTGFY KLYPSKFLIP PGKEISIEVE QCTRAESPTL
421 NHNILIEWFP LDSTPPTGDL QRLWSKPYLV PQSHWQYFVL PVYVDDSVTS YSPSHVSSVE
//