LOCUS CTQ86478.1 2073 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Nucleosome-remodeling factor subunit
NURF301 protein.
ACCESSION BX284602-4848
PROTEIN_ID CTQ86478.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="nurf-1"
/locus_tag="CELE_F26H11.2"
/standard_name="F26H11.2m"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00009180"
/db_xref="EnsemblGenomes-Tr:F26H11.2m"
/db_xref="GOA:A0A0K3ATY3"
/db_xref="InterPro:IPR001487"
/db_xref="InterPro:IPR001965"
/db_xref="InterPro:IPR011011"
/db_xref="InterPro:IPR013083"
/db_xref="InterPro:IPR018501"
/db_xref="InterPro:IPR019786"
/db_xref="InterPro:IPR019787"
/db_xref="InterPro:IPR036427"
/db_xref="InterPro:IPR038028"
/db_xref="UniProtKB/TrEMBL:A0A0K3ATY3"
/db_xref="WormBase:WBGene00009180"
intron_pos 196:2 (1/23)
intron_pos 225:0 (2/23)
intron_pos 312:2 (3/23)
intron_pos 403:1 (4/23)
intron_pos 510:2 (5/23)
intron_pos 655:0 (6/23)
intron_pos 730:0 (7/23)
intron_pos 841:2 (8/23)
intron_pos 885:2 (9/23)
intron_pos 997:2 (10/23)
intron_pos 1107:0 (11/23)
intron_pos 1258:0 (12/23)
intron_pos 1416:0 (13/23)
intron_pos 1473:0 (14/23)
intron_pos 1505:2 (15/23)
intron_pos 1540:0 (16/23)
intron_pos 1589:0 (17/23)
intron_pos 1624:2 (18/23)
intron_pos 1679:1 (19/23)
intron_pos 1711:0 (20/23)
intron_pos 1851:2 (21/23)
intron_pos 1911:2 (22/23)
intron_pos 1955:1 (23/23)
BEGIN
1 MDEDSEEEEE SSDDEFMLNE DQVVQEEEEE LNLTDIKIEK GLDEENKYCP WLDEDPASLP
61 KLELPESSQD IPIPTASIMD AVEIYEILRS YHRTLRITPF TFEDFCAALI SHNNSCIMAE
121 VHMALLRNCL KSDDEEQTHY SVTETNNSVN IMIHHMDTLT YAEILRQYIE AYPFADASVR
181 DAINVDNYPF VGYDAKLVVL LFMSYRFLYS SEFKKLVNNV GKFQNDENCR VCGKSSGRVV
241 GCTQCEAAFH VECSHLKPFP EVLVCNICKK NSAVRGVLPP DEAVDREPLR SQPIGRDRYG
301 RYYWFIVRRL VVQSLDETEL YYYSTVPQLY QLLQKLDRTY YEKDLCDTIR LRIDEFLEQM
361 ALTVEMTSER REAALETMVK RQLIGYDFAE ATTPQIYLHR DSMKRMASIL RDCAQKGQVK
421 QEVKLEEPVE GQSPVKCVQF VEDSILPESM IGIFDAKLIN TFWSGGATQE ELVEQFVDIS
481 DNFDAPSANL WRMGDEGNDQ TFMTYYNYYS RNEMSESFLT RKKAADKKKY MASKFAQIDN
541 FDWVVAKNRQ FYGDASLHCK FIMWTLQQVI KNIPIDLMHR KWPEFAKGFD LEVSVADDYK
601 KLVTCLLKLD CAVRKTIFMP QWWNGLGQTR LERITVDQRE NFMKEQQRLK KIDADALTKD
661 LDDSFVRVNY MKPKWPNTYI LRQRGETYRN AGKGSMGGWA WVAAKYVEKW IQVPESPKLP
721 LAVTVEEIKT ESVSNRKARR LELLVSKITK KRQRSGGKSS KKPTFELTNG CYSPSCRSNP
781 NRKCYSPMCR NGYLVSAKQA HDERKLEESG VLGEEKAWPI PEIQTFSTKR GGKSIFVLQK
841 KILRQMIMGG GCQQVYMPGF SAGIKSNLLI WPYPAPRPTL DLCWKWQTLN ARSLHAVALQ
901 LKIIWSSIKF NEFDPDDTHP DRRVVIDTPS HDERRRIIRH KEMPPYGQYE RYEMEIEIIP
961 LYDEPEEEDE SWLSRNRGGS SEFSHRSSSA RKKRPQRSLD NRRATAIRRE WVDGVTLKVF
1021 EIKDYWKWIR AEAEKTAKRK LEATRKAQKA KEDEERRRIQ QQQQRSVARI PVPMHSLIPS
1081 ERNNVPYLGS QQQRRPNGNE RGFLEKYNNS SSVSPQAHGY ASTPPPGYHQ PQPNIIRQAG
1141 YNQLPRKPTT SPFNFQSRPV ATIPTTPQLR AAAGADGVVR AVMMTPGNKS TVNTNSTPYP
1201 QALNRQQYQL QRQQQQPAVR RLTNGYHFMD GTMRGGGRNP SVQMHQRLPQ NRAALQRPFG
1261 ESTTEMRRVT EAAIPDNDGD EQPPVIPRYD PTSNFDAQRA QQQHPQSRPV YSTPAQMIRT
1321 TQPGGVKHNV ILMKASDGTQ KMVLKPGQFP PGTVISTGQR VVPYRQPTAV QQRQLYTATP
1381 GTRVVRIPNA NGGAPRQQDH QVMRRVVQAS GPRAMEYMDD QGTPPPGQQV RYVLQGGNSG
1441 TPNVNPPKVS SRGGPRGGLT MQMVQQQQQH NPEHRRLLAG RQKQKVTTYR DFMASRGYLD
1501 TSKFMMQTKP TFLPFEFNEE EEREINEAIA REEAWMRQEE ENKTSGYDSS GNPIRSITSS
1561 GDTQRAPPYV SNLLPSSNDS PDDKVIKQVL DVMFSQVCRW DRQYGWSKTH VKRARQKNDS
1621 DKMHLRKFRM NQRELLITDH MERLKKEINK RRTRMENEAE QQCGLLTPWR KARARPHRAA
1681 KPKAEVKKEV INPADITLGG DTYDYVKEQK PTESIATNVS RRRRTSANLS KSEDDRDKPE
1741 SQSTAPKSKE RRTSEPPASH VAFHTPGSAT PHDINLSIEH CTCQKIFDAS KLYIQCELCA
1801 RWYHGDCVGV AEQTILGLEH WSCEECIEEQ ERVKDQPALY CVCQKPYDDT KFYVGCDSCQ
1861 GWFHPECVGT TRAEAEQAAD YNCPACTREA EGYESEASDV SGSSRVSVQL TRADYTHVFE
1921 LLELLLEHRM STPFRNPVDL NEFPDYEKFI KKPMDLSTIT KKVERTEYLY LSQFVNDVNQ
1981 MFENAKTYNP KGNAVFKCAE TMQEVFDKKL IDVREQMTAR QQMLLLATAQ QQDPMSSIRK
2041 RVQSESQRTV DSLDIDSDQL LPLDANLMRL YDF
//