LOCUS CTQ86433.1 1127 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Egg-laying defective protein 27 protein.
ACCESSION BX284602-2423
PROTEIN_ID CTQ86433.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="egl-27"
/locus_tag="CELE_C04A2.3"
/standard_name="C04A2.3e"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00001194"
/db_xref="EnsemblGenomes-Tr:C04A2.3e"
/db_xref="GOA:A0A0K3ATV0"
/db_xref="InterPro:IPR000679"
/db_xref="InterPro:IPR000949"
/db_xref="InterPro:IPR001005"
/db_xref="InterPro:IPR001025"
/db_xref="InterPro:IPR009057"
/db_xref="InterPro:IPR017884"
/db_xref="UniProtKB/TrEMBL:A0A0K3ATV0"
/db_xref="WormBase:WBGene00001194"
intron_pos 29:1 (1/12)
intron_pos 69:0 (2/12)
intron_pos 116:0 (3/12)
intron_pos 158:0 (4/12)
intron_pos 179:2 (5/12)
intron_pos 234:0 (6/12)
intron_pos 294:0 (7/12)
intron_pos 370:0 (8/12)
intron_pos 446:1 (9/12)
intron_pos 511:2 (10/12)
intron_pos 887:0 (11/12)
intron_pos 1055:0 (12/12)
BEGIN
1 MSRFDSQCSS EDVNKEDECV PSSSEDSQDG VSSPMENDDE PEFSQKHYDI EPCYYSLTGK
61 SDRNCRGIVY RYRQDSDLKG FQSHDGTLYR LRDSVFVEVS QNEPYVIAAI CGFKYTKRDH
121 VVVKLTRYFR ADDIPEISLN LMKQERAELE INPHLCPQSL NRELFNSELQ ITQPVSCLRG
181 KCIVEYVKDV RHARTVADFS LDNDTFFFCL HYNQDSTKLA STHYAIRVGT SFQATLPPMA
241 ECSVGDDSDR DELLYRPNSI ESGEEEDYIK LARCYRTYTL SGNHMLDSQK NARSLQVSDL
301 LMDEAIIQLH RSGYKIDDAL SELNANDIIL TTDVDNMTQD DAKKFAKGIK QLGKNFSRIH
361 RELLPHHSRE QLVSYYYLWK KTPEATKPKQ AARRVNPTSI KRPTKEKVKA SRPTSTEYLD
421 FDSASESDVE NNGPSGRACH HCYGAESKDW HHANGLLLCT DCRLHYKKYG QLRQIANRPS
481 QVPACLFKRS NSDEEESGVR TRAGKKEQRR RTPSSMSETP DRRSPSTVSN GAPNLTAEET
541 PTKKLNGSVK RAPKRPLHNG VINNVEKSNS SEEPASPTTP PPTLTNGLTN GHGPESSTPN
601 GETISKRMKV EPSYDDDDDE EEGKMTIDEG DDDPMPVLNG FKKEESVEEI KLELNGTIKK
661 ENGVETDPTT PTCSMEAENE VCETPAVVSV EIRDETNGET NSDLKDDENV EPDSPEDTFE
721 LGSNVEFETK NAMFVRSIVR SCGPRCARTD LIFKIKVGGV WEKSIKEKEE RKKVHLQNQR
781 IQDSEKVAIQ QNQIKKEQQQ SQPTPQQIHQ QQAQQNAQHL QQLQQAVMLG HLPPEVLRQM
841 MPPQFGVDPT AILMQQMMAG QQSQGVNAAF QHQMALQQQL EAHQVQLMMA HQHQQKMIAE
901 QQQQQRHAAA QQLREREQRE QRERERERQH QQQAQQALHQ QQQQHAAAAA NQLNPAMMQM
961 MALMANSAAS QQDIARLMEM AAQQQQQQQQ AAQAQAQRDQ ERERREREAR EREAARERER
1021 EQAAREAAAR DQAAREHAQA VQAAAAAAQQ AQALTPDMQH MHLLQQLMLN PALMMQLQQA
1081 QAQQQQQQPQ VTNPLQMLQH GMAAQSANQA EMMRRIHPEP AMRPQHQ
//