LOCUS CTQ86422.1 1823 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Signal element on autosome protein
2 protein.
ACCESSION BX284602-1443
PROTEIN_ID CTQ86422.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="sea-2"
/locus_tag="CELE_K10G6.3"
/standard_name="K10G6.3i"
/note="Partially confirmed by transcript evidence"
/db_xref="GOA:A0A0K3ARE6"
/db_xref="InterPro:IPR013087"
/db_xref="InterPro:IPR036236"
/db_xref="UniProtKB/TrEMBL:A0A0K3ARE6"
/db_xref="WormBase:WBGene00004751"
intron_pos 7:2 (1/12)
intron_pos 32:2 (2/12)
intron_pos 90:0 (3/12)
intron_pos 137:2 (4/12)
intron_pos 287:2 (5/12)
intron_pos 652:2 (6/12)
intron_pos 686:2 (7/12)
intron_pos 1630:2 (8/12)
intron_pos 1685:0 (9/12)
intron_pos 1715:2 (10/12)
intron_pos 1783:1 (11/12)
intron_pos 1813:0 (12/12)
BEGIN
1 MGREYKFTGI AAKLNPLNCR LKLEIAEDLD ERVPTTSTSC SVASVAAATA TINTTAPTVL
61 TKSELQKTLQ KTSSSFSSSL ATTTTTSSHL NAPVESMEGH SSLASYSHHH PSSSHHHHPG
121 QQQSSSSSSS SHLQDFQSPP SASHPYYHQQ QPQHQHQQAQ QYGQATGSTN GGGQQQMTSM
181 YGGNDYDQHQ LHHQNQQHQA STSTQQFHHP QRPPPPQYDQ PSSSTGSSLP PLHTVRYEQL
241 PPPPSNQRTP TQQLQYPVKV VEAGGQAYAQ QVQQAQQSNR SGAAGVNSAL QPKPLPPLSS
301 ITSISSSAAG SSISAPSTSQ PSTTSSLITS PPSTSSSSMA PRKTPPNASS SSLIKRQSQD
361 VQEQQRVDFE VARNVSQIMS KNGLKVMHEP LLTGSLPQLA PLAPLPPPKS GVYQCPNCNR
421 NLANARNLQR HRQTCGSAQH AAPQLAAMLQ RSPPPCASAP PVAPPTAPST SFQHHNSTGN
481 LTLSYSSSSS RHQSSLYSPQ LEHQDLVGNP NVMLSDGYEY KDDPMLYQGP SGLSDSIWSR
541 DDSFHSEPPS ASHDQLDMDH LGFPDPLQDP LHHLDSFDSA DHRKETPREC HEPDELMTLD
601 PTPPQCGSER FYGINIDDMP LSLDCDEPLM RSESASLSSS SQGRNTPAAV FTCEACKKSV
661 SSERSLRRHY NTCKMFQTEL AASGEETVSN STTTTTTATT TSSKSTGNPL FTCEHCARQL
721 CSMSNLKRHR ATCKVAASSS SNSAASRPPS QPSTPATAPA TPMLQASQAP QPLQAPPQSP
781 METTATVTYT KTTVPPSVAN TWNTEKAQLI SPKPRSQTIF SEASSSMTVG DALRAQQHQQ
841 KMDQQIQIQF QQQQQQRFQH HQQQQQAGRI PPRPPNPILN QVQNPPQQVQ HNQHQNQMLN
901 PIRQPLLQSP PPPPPKKGLI EHKNTDLVLI TSEPLAERMD AKRRSSEGLV AVTSTPLPPI
961 QLPQRSQAPA PSRQQQQQPP VAYQVQFNGR PLPPMQLPPL QNPHNQQQQH QMLHQSQMNY
1021 QQVQQVQQVQ HVQQQQNLQN QHHHQQQHHQ QNQQQAPGNR SRSHSNVGKM EQEAQRQGSP
1081 LDSIITSVPL SIEVHHHIMK PGPLEQGQSS VDSQSTAEPS PRKASQQAYI CPECKKTYAS
1141 RKNVKRHRMA VHKLTLDEIL ANPEQPALDP LSAVGGAGRR HTVAGLETPD SALKPAPTKR
1201 KASEAPSAGV ATKKGKAMAA SVDEIQVKEE EEDQKEETVG SVERQEPPKK PVADDHKSAI
1261 APLPPANTIM PPPPPYNQAS AVPLNPPRTA LPPLQLPPLQ PLQSESPSWA SMSAPPTALI
1321 PRTPRSSEFA DEEDTRAMAK IAAELKRSAE DWPVLAVIEG VAAEPTNGED IDEDEILIKR
1381 LRQGGVLEDV GDVSDLLRDV QGGVDGEPFS EDMLLEKNLS TASSVGLPSL ASPGEQFGYQ
1441 QYSQHPQQHP QQHPQQHPQQ QQQVWNPNYE FQGYMQQQHP PMPVSQQFQQ PLLQRPASQP
1501 PPARPIVKNS RRPSTTPKPP PNLTCSGCKK ILGSDYSLRR HRAGCADVQQ ALNPEYPRPP
1561 KRKAAREAQK INEAEILASM PDPQMVAERS AAVAEAAAAE AAVERIGALP PPSVVHEIVH
1621 QVNADRQSMK KHNKTTSPPP AQEAPPTCAP DDPMSSSSSS STSSASPLQG GAKPSTNQAR
1681 HYCQFPECGK NFSSEWNLAR HTRESCKMTT RAHSYEPTSA ADKIDLIFMD KSKRRVSRTF
1741 LCTVSSLISY WLGEQGDRLE LDTKWEHFQL LLDVHTLKVA ITADNINLIA EQSKKYQLEH
1801 VIRMADQFMM NTNYTTPPTH VQL
//