LOCUS CDH92934.1 1112 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Patronin (microtubule-binding protein)
homolog protein.
ACCESSION BX284606-3974
PROTEIN_ID CDH92934.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ptrn-1"
/locus_tag="CELE_F35B3.5"
/standard_name="F35B3.5c"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004121"
/db_xref="EnsemblGenomes-Tr:F35B3.5c"
/db_xref="GOA:U4PAZ9"
/db_xref="InterPro:IPR001715"
/db_xref="InterPro:IPR011033"
/db_xref="InterPro:IPR014797"
/db_xref="InterPro:IPR022613"
/db_xref="InterPro:IPR032940"
/db_xref="InterPro:IPR036872"
/db_xref="InterPro:IPR038209"
/db_xref="UniProtKB/Swiss-Prot:U4PAZ9"
/db_xref="WormBase:WBGene00004121"
intron_pos 19:0 (1/21)
intron_pos 53:0 (2/21)
intron_pos 87:0 (3/21)
intron_pos 125:0 (4/21)
intron_pos 153:2 (5/21)
intron_pos 227:1 (6/21)
intron_pos 247:2 (7/21)
intron_pos 297:1 (8/21)
intron_pos 391:0 (9/21)
intron_pos 431:2 (10/21)
intron_pos 507:1 (11/21)
intron_pos 566:0 (12/21)
intron_pos 635:0 (13/21)
intron_pos 707:0 (14/21)
intron_pos 770:0 (15/21)
intron_pos 796:1 (16/21)
intron_pos 840:0 (17/21)
intron_pos 972:1 (18/21)
intron_pos 1009:0 (19/21)
intron_pos 1041:0 (20/21)
intron_pos 1066:2 (21/21)
BEGIN
1 MDFPLPALLA IEDYDENEGK LAASIRWLIS RVYEEKRDMP DKLRDGVQRD ENGHFQIDEA
61 VVGALCNGSL YAQAAAKIFK ESALVTKGHG AVLAVLTDYG IDVLHDGNEL VEEAQLVASA
121 PFNMSAHLAI IDALMMAHLR DVIPVSRVVE AVSRHTAVEP SEKPIDSVDA LLFWINKICL
181 LVRDDVERED SNTNIPEMED LYEDISDGQC LCALLHWYRP HEMPVADISF NDSATTRDCQ
241 YNLMLLQLFC RHHLAVDPFH FEIEDLLYLR DSLQMNVNAF LADLFVQFEP PVTPEPVETP
301 RIGPSPRRFV PASAIPDLRA ANAAARSSMH NRNRPRMYNP PPAVSHSQGP SRSVSRMSQD
361 SLFYSRPASI ALQRRSMDQD SVTDFQTIRQ GFENQAGTAQ LNRYDGSVTA SVRLAMEEKR
421 RKHDQQMAQM SFSSANETER LEKSKAAFFA LRKNDNDQTS KGKEEWYDHF EAKLRALELR
481 VGLEEGEDGT QSARLNRASS QPSVVQAGQT YPANYMTLPM NAAAQMTQSY IQHPQTPHDY
541 YMQQQMQQQQ QQQAQAQSNY ASPSQLRNSL SNGMINHAGY IVQSMYPGDY QQQQQQMQMQ
601 QGQMPVQPVG AYTPEGYFIP HHMQPIPVQQ GYQQMPQPGM GFNGMPATSQ PGFNMEGSPA
661 QMGYIQTANK PLDMEMPMQQ QPPQQPPQQM LPPNQNAFHL HSKSDDATQV QADPPLEINR
721 NLTNWGMTYK QEMPARSIPS RRTWQNETFI KNELDLVNSK ESVPHITDET TTQPEEAARR
781 FPDLMLDNHS ENLAPGRGFS RQNDRDDLST GRKSDDSPTD TPGRTFDDDE GSGENMEKIA
841 NERRIAKKAA LIAKTMKRKE EIETKVDLAE QRNAERRQVE NEKKELALRK KVEKEQQRQK
901 ILDEYKRKKL EKELGAELSA RSTGRGHSQP PFIRTKSQMS EVTESSRQNT PRMRGQSSVE
961 QRVSVSSLAE PTHKLYAKTV TKSNRGLINN ALQFSVFPGA VNNATRQATI TQMASSSSKH
1021 FLILFRDQKC QYRGLYTWDE ISDTAVKISG QGPPKCTEAM MNSMFKYDSG AKNFTNIATK
1081 HLSATIDGFA ILDQYWQKAR IPHSGTPAHK NN
//