LOCUS CDG24129.1 1249 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Myosin motor domain-containing
protein protein.
ACCESSION BX284606-2744
PROTEIN_ID CDG24129.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="hum-4"
/locus_tag="CELE_F46C3.3"
/standard_name="F46C3.3h"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00002037"
/db_xref="EnsemblGenomes-Tr:F46C3.3h"
/db_xref="GOA:S6EZR2"
/db_xref="InterPro:IPR000299"
/db_xref="InterPro:IPR000857"
/db_xref="InterPro:IPR001452"
/db_xref="InterPro:IPR011993"
/db_xref="InterPro:IPR019748"
/db_xref="InterPro:IPR019749"
/db_xref="InterPro:IPR035963"
/db_xref="InterPro:IPR036028"
/db_xref="InterPro:IPR038185"
/db_xref="UniProtKB/TrEMBL:S6EZR2"
/db_xref="WormBase:WBGene00002037"
intron_pos 137:0 (1/23)
intron_pos 202:0 (2/23)
intron_pos 242:2 (3/23)
intron_pos 259:0 (4/23)
intron_pos 286:2 (5/23)
intron_pos 329:0 (6/23)
intron_pos 387:0 (7/23)
intron_pos 427:1 (8/23)
intron_pos 506:1 (9/23)
intron_pos 546:0 (10/23)
intron_pos 587:2 (11/23)
intron_pos 672:0 (12/23)
intron_pos 722:0 (13/23)
intron_pos 758:1 (14/23)
intron_pos 851:2 (15/23)
intron_pos 896:1 (16/23)
intron_pos 928:0 (17/23)
intron_pos 986:1 (18/23)
intron_pos 1040:0 (19/23)
intron_pos 1086:2 (20/23)
intron_pos 1134:1 (21/23)
intron_pos 1190:0 (22/23)
intron_pos 1224:0 (23/23)
BEGIN
1 MAPVMHDGHG STRSRDYRIM KRGEVPSQYS TIRNMPVPEH GKDVDQFLDA VFDQVLSKDE
61 QRAAHFNSNQ LANTIKGGKL RPEGYYEPPV QTYSPVPPRY PTLRRVDDSP LRSRAKSLPR
121 IISPRHEHFV RRPHSRNSYS NESTSSDDQM NYRTRSRERS LPRFHSNNGY NYDPSQPVYM
181 MPVQMNGHGE MILLSPVASE HKAQSRHRTH DRSHRHHVPS GVERYMAKRS PSVDILKPPM
241 SRRTPDAMVE QTYVRPHLAQ SPVGRQTSRF EEFSALPRGD SRARERMENP LLARQIPRAY
301 PYQNGNVVPP PPSSYRAPSP APTSGDRRGL NRLPQESYTE PAVKNTKNNS EYLSPHRFNL
361 DEQKAVIRHE KETAKNAINM LSDRLRSPVP QPTPPPPPPP VREEWVIRDS VERDPVTQGR
421 IRGSFRKEPL VPQPPRPPVV AEKPAVKFVK APWKLTIRKE MFYPGEVLND IQIIDQVFAQ
481 IVEDCKKSYP YRIREQDRKQ VETVLRQYEI PPSDLNNQSN IHPDVKVAVI ELARLWPLYF
541 NQVYEVVEKR PDESVSTIFA ISEHGIRLIV HTPHDLENPL KIQDFFPFET IADVSLEAND
601 ILSVHVRHED EENAYSAVRI KTNQAPQIKK TLDRCLSGGV VPKRKFVRAL EDYVTSEVNH
661 LSFKQGDVIE LLQEPEGETP PVGNWLYGKI ENRFGFLLAQ YVDSTDGDNV PPIRHETSED
721 RDERVRFFDD EVPFSSERYT MIDFATKYFR KPKDKKKQET WAWEDISQIV RFSEKPISQS
781 LLADLGNEES KYAVETFHAI MKFMGDEPLK KSESMTDVVF KVLLICHRQP TLRDEVYCQL
841 IKQTTSNISQ KPNSALRAWR LLTIITAYFP SSLTLKPYVL QYLGDNADEW QRPFHGTARI
901 CQTNMIQTFK YGGRKVLLNA LEVQQITDGC QLRRQAFYIS KDHNVSQTLR PITVAEEMIQ
961 ELCNLLNVRS LHEQQEFSLC YTVGKDKHLN YCKNDNYLMD IITESEHKKL PFQFYLKRTV
1021 WVHPLRYDNA AYIDSMFDQV IDDYLRGSLI STNSLGQLTA ATTEEIIKLA AYLFLLLPDN
1081 PKGLNAKTLP QIVPKSVIEP KHRHQEEMVT RISRQLKMFG GRMRPAEAKS HFLELLSTWP
1141 TFGVLHYRLK SVVENGHQLP EVILTINKSG IQLLQPKSKE VFKERNYDQI VSVESIRKTA
1201 YKIVRLVINT MQGEETLDIK TDEADEISHL IGQYMFVTGG AEERGSTEL
//