LOCUS CDG24095.1 785 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Rab GTPase-activating protein eat-
17 protein.
ACCESSION BX284606-3871
PROTEIN_ID CDG24095.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="eat-17"
/locus_tag="CELE_T24D11.1"
/standard_name="T24D11.1d"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00020770"
/db_xref="EnsemblGenomes-Tr:T24D11.1d"
/db_xref="GOA:S6FWN8"
/db_xref="InterPro:IPR000195"
/db_xref="InterPro:IPR031214"
/db_xref="InterPro:IPR035969"
/db_xref="UniProtKB/TrEMBL:S6FWN8"
/db_xref="WormBase:WBGene00020770"
intron_pos 6:2 (1/9)
intron_pos 39:0 (2/9)
intron_pos 108:0 (3/9)
intron_pos 337:0 (4/9)
intron_pos 368:0 (5/9)
intron_pos 406:2 (6/9)
intron_pos 462:0 (7/9)
intron_pos 715:0 (8/9)
intron_pos 767:0 (9/9)
BEGIN
1 MEQLNKSNEE DSRSVASKKT GSSESRKGAR EHSPEEDEED LWSVWGELIL NWEIEVKKRP
61 NYIKDLVKRG IPQHFRMIAW QNLSNASVSS VHDLYSDYMR QSSVYEKVIQ RDIPRTYPEL
121 DFFKDGERGQ SLLFNVIKAY SVHDKEVGYC QGSAFIVGLL LLQMPEEEAF AVLVSLMENY
181 RLRELYKPTM TDLGLCMFQL ECLVQDQMPD LYTHFNNMGF DTSMYASSWF LTLFTTTMPL
241 DIANRIMDCF LVEGMDFIFC ISIAILQQAR IELLRLDMEG MLKYFQREVR ERYEFDADLL
301 FTVANQVQLN AKRMKRLEKD YLTKRTKEQE EAVELRRLRT ENRLLRQRID YLEAESSALA
361 DRLVKGQVNL AQEAENYINI AHELNKLRDM NSDVHRKLEG AYETIRELSS ARRDNIMDTG
421 TQVDDTSMIE HIHSLQQELI EAHTRQADSE NTLRDAKLRV SELEMANKRL LENEPSEDVA
481 GLQEELISVK MREAESSLAL KEMRQRLAEL EQHWAKYVHV RAFDPSSASI EKESTSEAHS
541 TQQQPSPPLT SARARLAKIT ASLIGGSTEE TDNCISVREL EDQLMGVRIK EADTLAELKE
601 MRQKVMELET QNHVCTNQLK RQDEEMKRVR EDSEVLVKKR KELEDQLKDE KEKLDNKESE
661 FNEGRINDRL KYSEAMQTIQ DLQSSISQLE LKKAEKWTQN QLRGSSVCDL DEESNSHGSI
721 CSNVDHLSLA SDEMNALLAD MTVRIPTLDD LAEEGSATET DELRPKELND GNDTTDSGVQ
781 LSDSH
//