LOCUS CDG24094.1 885 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Rab GTPase-activating protein eat-
17 protein.
ACCESSION BX284606-3868
PROTEIN_ID CDG24094.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="eat-17"
/locus_tag="CELE_T24D11.1"
/standard_name="T24D11.1b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00020770"
/db_xref="EnsemblGenomes-Tr:T24D11.1b"
/db_xref="GOA:S6FMY8"
/db_xref="InterPro:IPR000195"
/db_xref="InterPro:IPR031214"
/db_xref="InterPro:IPR035969"
/db_xref="UniProtKB/TrEMBL:S6FMY8"
/db_xref="WormBase:WBGene00020770"
intron_pos 38:2 (1/11)
intron_pos 74:1 (2/11)
intron_pos 106:2 (3/11)
intron_pos 139:0 (4/11)
intron_pos 208:0 (5/11)
intron_pos 437:0 (6/11)
intron_pos 468:0 (7/11)
intron_pos 506:2 (8/11)
intron_pos 562:0 (9/11)
intron_pos 815:0 (10/11)
intron_pos 867:0 (11/11)
BEGIN
1 MVPSPALVGT PSVFPHHQST SFFQETASFF NLDWERLWHS RSNSNSTSSP RNSPSQLSPP
61 MAATAALRRS SDYGSADTEC GEPCETGAPV SLNEVDLLAK MEQLNKSNEE DSRSVASKKT
121 GSSESRKGAR EHSPEEDEED LWSVWGELIL NWEIEVKKRP NYIKDLVKRG IPQHFRMIAW
181 QNLSNASVSS VHDLYSDYMR QSSVYEKVIQ RDIPRTYPEL DFFKDGERGQ SLLFNVIKAY
241 SVHDKEVGYC QGSAFIVGLL LLQMPEEEAF AVLVSLMENY RLRELYKPTM TDLGLCMFQL
301 ECLVQDQMPD LYTHFNNMGF DTSMYASSWF LTLFTTTMPL DIANRIMDCF LVEGMDFIFC
361 ISIAILQQAR IELLRLDMEG MLKYFQREVR ERYEFDADLL FTVANQVQLN AKRMKRLEKD
421 YLTKRTKEQE EAVELRRLRT ENRLLRQRID YLEAESSALA DRLVKGQVNL AQEAENYINI
481 AHELNKLRDM NSDVHRKLEG AYETIRELSS ARRDNIMDTG TQVDDTSMIE HIHSLQQELI
541 EAHTRQADSE NTLRDAKLRV SELEMANKRL LENEPSEDVA GLQEELISVK MREAESSLAL
601 KEMRQRLAEL EQHWAKYVHV RAFDPSSASI EKESTSEAHS TQQQPSPPLT SARARLAKIT
661 ASLIGGSTEE TDNCISVREL EDQLMGVRIK EADTLAELKE MRQKVMELET QNHVCTNQLK
721 RQDEEMKRVR EDSEVLVKKR KELEDQLKDE KEKLDNKESE FNEGRINDRL KYSEAMQTIQ
781 DLQSSISQLE LKKAEKWTQN QLRGSSVCDL DEESNSHGSI CSNVDHLSLA SDEMNALLAD
841 MTVRIPTLDD LAEEGSATET DELRPKELND GNDTTDSGVQ LSDSH
//