LOCUS CCU83306.1 948 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Ras GTPase-activating protein gap-2 protein.
ACCESSION BX284606-2220
PROTEIN_ID CCU83306.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="gap-2"
/locus_tag="CELE_ZK899.8"
/standard_name="ZK899.8l"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00001516"
/db_xref="EnsemblGenomes-Tr:ZK899.8l"
/db_xref="GOA:Q8MLZ5"
/db_xref="InterPro:IPR000008"
/db_xref="InterPro:IPR001849"
/db_xref="InterPro:IPR001936"
/db_xref="InterPro:IPR008936"
/db_xref="InterPro:IPR023152"
/db_xref="InterPro:IPR035892"
/db_xref="InterPro:IPR039360"
/db_xref="UniProtKB/Swiss-Prot:Q8MLZ5"
/db_xref="WormBase:WBGene00001516"
intron_pos 20:2 (1/13)
intron_pos 78:1 (2/13)
intron_pos 118:2 (3/13)
intron_pos 185:2 (4/13)
intron_pos 230:2 (5/13)
intron_pos 306:0 (6/13)
intron_pos 420:2 (7/13)
intron_pos 533:2 (8/13)
intron_pos 620:2 (9/13)
intron_pos 745:2 (10/13)
intron_pos 810:0 (11/13)
intron_pos 866:2 (12/13)
intron_pos 919:0 (13/13)
BEGIN
1 MKHMFSIRSS SYTVNIPNQP SLHRVDASNT PSRDSSLYAQ PPARRHLSQP AREGSLRACR
61 SHESLLSSAH STHMIELNED NRLHPVHPSI FEVPNCFRLA STYYSCRTPL ERAKWMENLR
121 KTMNPRRDQQ RRTENSMLIW ILEAKGLPAK RKYYCEMTLD KTLYAKTSSK ARTDNVFWGE
181 NFEFMMLPKI DEVCVSLFRE SDSKKKKDTL IGYVTIGIDQ LSSRSPVERW YTVNTSHSDS
241 GTSRIASALG GKSSSQESPS LRIKARWQSV HILPLRAYDN LLETLCYNYL PLCEQLEPVL
301 NVRDKEDLAT SLVRVMYKHN LAKEFLCDLI MKEVEKLDND HLMFRGNTLA TKAMESFMKL
361 VADDYLDSTL SDFIKTVLQC EDSCEVDPQK LGNVSNSSLE KNRALLMRYV EVAWTKILNN
421 VHQLPKNLRD VFSALRCRLE AQNREALADT LISSSIFLRF LCPAILSPSL FNLVSEYPSP
481 TNARNLTLIA KTLQNLANFS KFGGKEPHME FMNEFVDREW HRMKDFLLRI SSESKSGPEK
541 NADAIVDAGK ELSLIATYLE EAWTPLLQEK NGNKHPLSNV KSVLSELAEC KRRSDNGVFH
601 SPMVQQPSSD YENSPQQHVV PRHENVPAYR STPPTGQATV LGRSTNRPAT HLLTSDDYVL
661 SSAFQTPSLR PGGTRLSDET GTSSSRTSDK TTSSAEIRDD TDSDFELRED RGRGGRNRKR
721 LPRTDASPSS SQQASSGYLS NNPSRSSYSN SSSSSPVERM AALSIANPVF GPGPSSGYAI
781 PAEPKEIVYQ KRASPPPYDP DVHNYHYQPM QVYAVPPDCQ VSPRTQATGG VNAQNRLSLP
841 RTNPRASRNS TLLRPSVVNV PDDWDRTSDY WRDRGENNYR SQLESQVESQ AREIERLMRE
901 NIELKSKMMS STKTVDSKRS DSGASEDSYD SLSSLDRPSR QSLVVVPN
//