LOCUS       CCQ25669.1               874 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Aggrecan core protein protein.
ACCESSION   BX284606-4114
PROTEIN_ID  CCQ25669.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="T23E7.2"
                     /locus_tag="CELE_T23E7.2"
                     /standard_name="T23E7.2f"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00020732"
                     /db_xref="EnsemblGenomes-Tr:T23E7.2f"
                     /db_xref="UniProtKB/TrEMBL:L8E6J9"
                     /db_xref="WormBase:WBGene00020732"
     intron_pos      40:1 (1/11)
     intron_pos      69:0 (2/11)
     intron_pos      99:0 (3/11)
     intron_pos      149:0 (4/11)
     intron_pos      305:1 (5/11)
     intron_pos      406:2 (6/11)
     intron_pos      492:2 (7/11)
     intron_pos      645:2 (8/11)
     intron_pos      719:2 (9/11)
     intron_pos      815:0 (10/11)
     intron_pos      839:0 (11/11)
BEGIN
        1 MSEVDAQEEF HDAPEEAVIE IQKDFVAEIE QDNSNAQLVE EGDDQLVTAE ADDEKSAQQV
       61 DEDRTEDQVP DITGTEYVDP MTTSMDGIED LPANDEAQFE DTILEEDELP DQLESAENQE
      121 PRSELVSSGV EEEIIEEEDI EEIEESDYVE ESAPADEPAP EEEKPQEEAP AEEPAPAEEA
      181 PQEEVPAEEP VAEETAPAEE AAVEEPVVEE AAPVEEAPEA EETAPAEEPL IEVAVEEAPA
      241 EEPVAEEAEP EAEKQEFELQ APPEGKRPRT PNDLDNPTAD EEPAAELEAD AGSEVPPTPK
      301 TAASEKQSVP PTPKSAAPSE VPPTPKSAAP SEVPPTPKSA APSEVPLTPK SAAQSSVPPT
      361 PKSAVPSEAP PTPRSAAPSD VPPTPKSNGH IANGSIPGTP SVAQESAKAT PAATPAATAT
      421 PAATATPAAT GTPKADTAFN FEETPATPRS SVPATPTESN LTTPAPKTPK TPKTPRTPRT
      481 PKTPRTPKTP AVVEPEPEPV AEEPEPVAEP EPEPEPVAEA EPEAEPAVEE EPAEEPEPAA
      541 DETATEPTAE EAEPEAVEES IEKTEVVEEE SAPPAARQSS PSPPPARRRP QSPSPERQRT
      601 SRHADRDITS YDEDSYRAVP PPRMPTATSF SSWSPPDKQS YTPISPFVST ANKYRNEYTS
      661 GSSYRPTNMY TSHFDDIVAT GAFSSALYST NRLIERSRSR TRERKQAMRS QRSASNYYRY
      721 SSQAPAPLRA REYSTPPTRE ISRAPSRNTS FVSFLDYSSA KQGELSRANS RTSIYGDSLS
      781 RSCSRANVDA YLGGGRLSRV DSYVRDIHTP YEYEVPSTYD RYRSSSRGPS YSTINGYTPV
      841 YTSQYGRSST DKSTGNSALH SLYSGFARDW AAFN
//