LOCUS CCP46735.1 169 aa PRT BCT 27-FEB-2015
DEFINITION Mycobacterium tuberculosis H37Rv Conserved hypothetical
protein protein.
ACCESSION AL123456-4013
PROTEIN_ID CCP46735.1
SOURCE Mycobacterium tuberculosis H37Rv
ORGANISM Mycobacterium tuberculosis H37Rv
Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE 1
AUTHORS Cole S.T., Brosch R., Parkhill J., Garnier T., Churcher C.,
Harris D., Gordon S.V., Eiglmeier K., Gas S., Barry C.E.III.,
Tekaia F., Badcock K., Basham D., Brown D., Chillingworth T.,
Connor R., Davies R., Devlin K., Feltwell T., Gentles S.,
Hamlin N., Holroyd S., Hornsby T., Jagels K., Krogh A., McLean J.,
Moule S., Murphy L., Oliver K., Osborne J., Quail M.A.,
Rajandream M.A., Rogers J., Rutter S., Seeger K., Skelton J.,
Squares R., Squares S., Sulston J.E., Taylor K., Whitehead S.,
Barrell B.G.
TITLE Deciphering the biology of Mycobacterium tuberculosis from the
complete genome sequence
JOURNAL Nature 393(6685), 537-544(1998).
PUBMED 9634230
REMARK Erratum:[Nature 1998 Nov 12;396(6707):190]
REFERENCE 2
AUTHORS Camus J.C., Pryor M.J., Medigue C., Cole S.T.
TITLE Re-annotation of the genome sequence of Mycobacterium tuberculosis
H37Rv
JOURNAL Microbiology (Reading, Engl.) 148(Pt 10), 2967-2973(2002).
PUBMED 12368430
REFERENCE 3
AUTHORS Lew J.M., Kapopoulou A., Jones L.M., Cole S.T.
TITLE TubercuList--10 years after
JOURNAL Tuberculosis (Edinb) 91(1), 1-7(2011).
PUBMED 20980199
REFERENCE 4 (bases 1 to 4411529)
AUTHORS Parkhill J.
JOURNAL Submitted (11-JUN-1998) to the INSDC. Submitted on behalf of the
Mycobacterium tuberculosis sequencing and mapping teams, Sanger
Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA
Unite de Genetique Moleculaire Bacterienne, Institut Pasteur, 28
rue du Docteur Roux, 75724 Paris Cedex 15, France E-mail:
parkhill@sanger.ac.uk
REFERENCE 5 (bases 1 to 4411532)
AUTHORS Lew J.M.
JOURNAL Submitted (18-DEC-2012) to the INSDC. Lew J., Ecole Polytechnique
Federale de Lausanne, CH-1015, Lausanne, Switzerland, and the Swiss
Institute of Bioinformatics, CMU - Rue Michel-Servet 1, 1211 Geneva
4, SWITZERLAND
COMMENT On or before Feb 1, 2013 this sequence version replaced
gi:41352722, gi:38490165, gi:38490207, gi:41353619, gi:38490250,
gi:38684030, gi:38490288, gi:41353667, gi:41353422, gi:41352756,
gi:38490319, gi:41352785, gi:38490370, gi:41353971.
Note:
This annotation is from the TubercuList website, Release 26, Dec
2012 (URL: http://tuberculist.epfl.ch) (email:
tuberculist@epfl.ch).
FEATURES Qualifiers
source /organism="Mycobacterium tuberculosis H37Rv"
/strain="H37Rv"
/mol_type="genomic DNA"
/db_xref="taxon:83332"
protein /transl_table=11
/locus_tag="Rv3906c"
/note="Rv3906c, (MTCY15F10.05), len: 169 aa. Conserved
hypothetical protein, strongly related to Q50578|AT9S (sod
related in Escherichia coli) from Mycobacterium
tuberculosis strain aoyama B (155 aa), but apparently
different as flanking sequences differ and shorter 43
aa,FASTA scores: opt: 548, E(): 1.3e-26, (79.4% identity
in 102 aa overlap). Selfmarch results suggest that Rv3906c
is not related to any other hypothetical protein from
Mycobacterium tuberculosis strain H37Rv except itself.
Shows also similarity with Q9VFR2|CG9297 hypothetical
protein from Drosophila melanogaster (Fruit fly) (930
aa),FASTA scores: opt: 221, E(): 4.9e-06, (36.95% identity
in 157 aa overlap); Q9HQ55|CBP|VNG1320G calcium-binding
protein homology from Halobacterium sp. strain NRC-1 (385
aa) FASTA scores: opt: 143, E(): 0.13, (35.65% identity in
160 aa overlap); Q24795 calcium-binding protein (fragment)
from Echinococcus granulosus (338 aa), FASTA scores: opt:
140, E(): 0.17, (33.95% identity in 156 aa overlap)."
/db_xref="EnsemblGenomes-Gn:Rv3906c"
/db_xref="EnsemblGenomes-Tr:CCP46735"
/db_xref="GOA:O05439"
/db_xref="InterPro:IPR028974"
/db_xref="UniProtKB/TrEMBL:O05439"
BEGIN
1 MEYCIAGDDG SAGIWNRPFD VDLDGDGRLD AIGLDLDGDG LRDDALADFD GDDVADHAVF
61 DVDNDGTPES YFIDDGSGTW AVAVDRGGQL RWYGLDGVEH TGGPLVDFDG FGGLDDRLLD
121 TDGDGLADRV LCAGEQRVTG YVDTDGDGRW DVRLTDTDGD GTADGASSL
//