LOCUS CCP46578.1 71 aa PRT BCT 27-FEB-2015
DEFINITION Mycobacterium tuberculosis H37Rv Probable integrase (fragment)
protein.
ACCESSION AL123456-3856
PROTEIN_ID CCP46578.1
SOURCE Mycobacterium tuberculosis H37Rv
ORGANISM Mycobacterium tuberculosis H37Rv
Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE 1
AUTHORS Cole S.T., Brosch R., Parkhill J., Garnier T., Churcher C.,
Harris D., Gordon S.V., Eiglmeier K., Gas S., Barry C.E.III.,
Tekaia F., Badcock K., Basham D., Brown D., Chillingworth T.,
Connor R., Davies R., Devlin K., Feltwell T., Gentles S.,
Hamlin N., Holroyd S., Hornsby T., Jagels K., Krogh A., McLean J.,
Moule S., Murphy L., Oliver K., Osborne J., Quail M.A.,
Rajandream M.A., Rogers J., Rutter S., Seeger K., Skelton J.,
Squares R., Squares S., Sulston J.E., Taylor K., Whitehead S.,
Barrell B.G.
TITLE Deciphering the biology of Mycobacterium tuberculosis from the
complete genome sequence
JOURNAL Nature 393(6685), 537-544(1998).
PUBMED 9634230
REMARK Erratum:[Nature 1998 Nov 12;396(6707):190]
REFERENCE 2
AUTHORS Camus J.C., Pryor M.J., Medigue C., Cole S.T.
TITLE Re-annotation of the genome sequence of Mycobacterium tuberculosis
H37Rv
JOURNAL Microbiology (Reading, Engl.) 148(Pt 10), 2967-2973(2002).
PUBMED 12368430
REFERENCE 3
AUTHORS Lew J.M., Kapopoulou A., Jones L.M., Cole S.T.
TITLE TubercuList--10 years after
JOURNAL Tuberculosis (Edinb) 91(1), 1-7(2011).
PUBMED 20980199
REFERENCE 4 (bases 1 to 4411529)
AUTHORS Parkhill J.
JOURNAL Submitted (11-JUN-1998) to the INSDC. Submitted on behalf of the
Mycobacterium tuberculosis sequencing and mapping teams, Sanger
Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA
Unite de Genetique Moleculaire Bacterienne, Institut Pasteur, 28
rue du Docteur Roux, 75724 Paris Cedex 15, France E-mail:
parkhill@sanger.ac.uk
REFERENCE 5 (bases 1 to 4411532)
AUTHORS Lew J.M.
JOURNAL Submitted (18-DEC-2012) to the INSDC. Lew J., Ecole Polytechnique
Federale de Lausanne, CH-1015, Lausanne, Switzerland, and the Swiss
Institute of Bioinformatics, CMU - Rue Michel-Servet 1, 1211 Geneva
4, SWITZERLAND
COMMENT On or before Feb 1, 2013 this sequence version replaced
gi:41352722, gi:38490165, gi:38490207, gi:41353619, gi:38490250,
gi:38684030, gi:38490288, gi:41353667, gi:41353422, gi:41352756,
gi:38490319, gi:41352785, gi:38490370, gi:41353971.
Note:
This annotation is from the TubercuList website, Release 26, Dec
2012 (URL: http://tuberculist.epfl.ch) (email:
tuberculist@epfl.ch).
FEATURES Qualifiers
source /organism="Mycobacterium tuberculosis H37Rv"
/strain="H37Rv"
/mol_type="genomic DNA"
/db_xref="taxon:83332"
protein /transl_table=11
/locus_tag="Rv3751"
/note="Rv3751, (MTV025.099), len: 71 aa. Probable
integrase (fragment), similar to part of many e.g. Q48908
integrase (fragment) from Mycobacterium paratuberculosis
(191 aa),FASTA scores: opt: 206, E(): 5.5e-08, (57.65%
identity in 59 aa overlap); Q9ZWV7|int integrase from
Corynephage 304L (395 aa), FASTA scores: opt: 156, E():
0.00036, (45.75% identity in 59 aa overlap); Q9K722|BH3551
integrase (phage-related protein) from Bacillus halodurans
(378 aa),FASTA scores: opt: 151, E(): 0.00079, (46.15%
identity in 52 aa overlap); etc. Also similarity with
various conjugative transposons. Also similar to
Mycobacterium tuberculosis hypothetical proteins e.g.
P71903|Rv2309c|MTCY3G12.25 (151 aa), FASTA scores: opt:
193, E(): 3.8e-07, (50.85% identity in 59 aa overlap);
O53403|Rv1055|MTV017.08 (78 aa), FASTA scores: opt:
171,E(): 7.8e-06, (54.15% identity in 48 aa overlap); etc.
This region is a possible MT-complex-specific genomic
island (See Becq et al., 2007)."
/db_xref="EnsemblGenomes-Gn:Rv3751"
/db_xref="EnsemblGenomes-Tr:CCP46578"
/db_xref="GOA:O69718"
/db_xref="InterPro:IPR002104"
/db_xref="InterPro:IPR011010"
/db_xref="InterPro:IPR013762"
/db_xref="UniProtKB/TrEMBL:O69718"
BEGIN
1 MKRAKVQQIT PHDLRHTAAS LAVSAGVNVL ALQRILGHKS AKVTLDTYAD LFDADLDAVA
61 VTLGKDADQQ T
//