LOCUS CCP45928.1 100 aa PRT BCT 27-FEB-2015
DEFINITION Mycobacterium tuberculosis H37Rv Conserved hypothetical
protein SseC1 protein.
ACCESSION AL123456-3206
PROTEIN_ID CCP45928.1
SOURCE Mycobacterium tuberculosis H37Rv
ORGANISM Mycobacterium tuberculosis H37Rv
Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE 1
AUTHORS Cole S.T., Brosch R., Parkhill J., Garnier T., Churcher C.,
Harris D., Gordon S.V., Eiglmeier K., Gas S., Barry C.E.III.,
Tekaia F., Badcock K., Basham D., Brown D., Chillingworth T.,
Connor R., Davies R., Devlin K., Feltwell T., Gentles S.,
Hamlin N., Holroyd S., Hornsby T., Jagels K., Krogh A., McLean J.,
Moule S., Murphy L., Oliver K., Osborne J., Quail M.A.,
Rajandream M.A., Rogers J., Rutter S., Seeger K., Skelton J.,
Squares R., Squares S., Sulston J.E., Taylor K., Whitehead S.,
Barrell B.G.
TITLE Deciphering the biology of Mycobacterium tuberculosis from the
complete genome sequence
JOURNAL Nature 393(6685), 537-544(1998).
PUBMED 9634230
REMARK Erratum:[Nature 1998 Nov 12;396(6707):190]
REFERENCE 2
AUTHORS Camus J.C., Pryor M.J., Medigue C., Cole S.T.
TITLE Re-annotation of the genome sequence of Mycobacterium tuberculosis
H37Rv
JOURNAL Microbiology (Reading, Engl.) 148(Pt 10), 2967-2973(2002).
PUBMED 12368430
REFERENCE 3
AUTHORS Lew J.M., Kapopoulou A., Jones L.M., Cole S.T.
TITLE TubercuList--10 years after
JOURNAL Tuberculosis (Edinb) 91(1), 1-7(2011).
PUBMED 20980199
REFERENCE 4 (bases 1 to 4411529)
AUTHORS Parkhill J.
JOURNAL Submitted (11-JUN-1998) to the INSDC. Submitted on behalf of the
Mycobacterium tuberculosis sequencing and mapping teams, Sanger
Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA
Unite de Genetique Moleculaire Bacterienne, Institut Pasteur, 28
rue du Docteur Roux, 75724 Paris Cedex 15, France E-mail:
parkhill@sanger.ac.uk
REFERENCE 5 (bases 1 to 4411532)
AUTHORS Lew J.M.
JOURNAL Submitted (18-DEC-2012) to the INSDC. Lew J., Ecole Polytechnique
Federale de Lausanne, CH-1015, Lausanne, Switzerland, and the Swiss
Institute of Bioinformatics, CMU - Rue Michel-Servet 1, 1211 Geneva
4, SWITZERLAND
COMMENT On or before Feb 1, 2013 this sequence version replaced
gi:41352722, gi:38490165, gi:38490207, gi:41353619, gi:38490250,
gi:38684030, gi:38490288, gi:41353667, gi:41353422, gi:41352756,
gi:38490319, gi:41352785, gi:38490370, gi:41353971.
Note:
This annotation is from the TubercuList website, Release 26, Dec
2012 (URL: http://tuberculist.epfl.ch) (email:
tuberculist@epfl.ch).
FEATURES Qualifiers
source /organism="Mycobacterium tuberculosis H37Rv"
/strain="H37Rv"
/mol_type="genomic DNA"
/db_xref="taxon:83332"
protein /transl_table=11
/gene="sseC1"
/gene_synonym="sseC"
/locus_tag="Rv3118"
/note="Rv3118, (MTCY164.28, O05794), len: 100 aa.
SseC1,conserved hypothetical protein, equivalent to
Q9CBC7|ML2199 hypothetical protein from Mycobacterium
leprae (100 aa),FASTA scores: opt: 545, E(): 3.1e-30,
(84.0% identity in 10 aa overlap). Also similar to
hypothetical proteins e.g. Q50035 from Saccharopolyspora
erythraea (Streptomyces erythraeus) (101 aa), FASTA
scores: opt: 345, E(): 9.7e-17,(57.15% identity in 98 aa
overlap); and Q9K4H3|SCD66.02 from Streptomyces coelicolor
(95 aa), FASTA scores: opt: 249, E(): 2.8e-10, (48.5%
identity in 99 aa overlap). Some weak similarity with
Q9ZB84|PCAG protocatechuate 3,4-dioxygenase alpha-subunit
from Pseudomonas marginata (196 aa), FASTA scores: opt:
109, E(): 1.4, (31.3% identity in 83 aa overlap); and
other bacterial proteins. Identical second copy present as
Rv0814c|AL022004|MTV043.06c|SSEC2 from Mycobacterium
tuberculosis (100 aa) (100.0% identity in 100 aa overlap).
Note that previously known as sseC. This region is a
possible MT-complex-specific genomic island (See Becq et
al., 2007)."
/db_xref="EnsemblGenomes-Gn:Rv3118"
/db_xref="EnsemblGenomes-Tr:CCP45928"
/db_xref="InterPro:IPR008969"
/db_xref="InterPro:IPR010814"
/db_xref="UniProtKB/Swiss-Prot:P0CG96"
BEGIN
1 MCSGPKQGLT LPASVDLEKE TVITGRVVDG DGQAVGGAFV RLLDSSDEFT AEVVASATGD
61 FRFFAAPGSW TLRALSAAGN GDAVVQPSGA GIHEVDVKIT
//