LOCUS CCP43692.1 158 aa PRT BCT 27-FEB-2015
DEFINITION Mycobacterium tuberculosis H37Rv Possible formamidopyrimidine-
DNA glycosylase (FAPY-DNA glycosylase) protein.
ACCESSION AL123456-970
PROTEIN_ID CCP43692.1
SOURCE Mycobacterium tuberculosis H37Rv
ORGANISM Mycobacterium tuberculosis H37Rv
Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE 1
AUTHORS Cole S.T., Brosch R., Parkhill J., Garnier T., Churcher C.,
Harris D., Gordon S.V., Eiglmeier K., Gas S., Barry C.E.III.,
Tekaia F., Badcock K., Basham D., Brown D., Chillingworth T.,
Connor R., Davies R., Devlin K., Feltwell T., Gentles S.,
Hamlin N., Holroyd S., Hornsby T., Jagels K., Krogh A., McLean J.,
Moule S., Murphy L., Oliver K., Osborne J., Quail M.A.,
Rajandream M.A., Rogers J., Rutter S., Seeger K., Skelton J.,
Squares R., Squares S., Sulston J.E., Taylor K., Whitehead S.,
Barrell B.G.
TITLE Deciphering the biology of Mycobacterium tuberculosis from the
complete genome sequence
JOURNAL Nature 393(6685), 537-544(1998).
PUBMED 9634230
REMARK Erratum:[Nature 1998 Nov 12;396(6707):190]
REFERENCE 2
AUTHORS Camus J.C., Pryor M.J., Medigue C., Cole S.T.
TITLE Re-annotation of the genome sequence of Mycobacterium tuberculosis
H37Rv
JOURNAL Microbiology (Reading, Engl.) 148(Pt 10), 2967-2973(2002).
PUBMED 12368430
REFERENCE 3
AUTHORS Lew J.M., Kapopoulou A., Jones L.M., Cole S.T.
TITLE TubercuList--10 years after
JOURNAL Tuberculosis (Edinb) 91(1), 1-7(2011).
PUBMED 20980199
REFERENCE 4 (bases 1 to 4411529)
AUTHORS Parkhill J.
JOURNAL Submitted (11-JUN-1998) to the INSDC. Submitted on behalf of the
Mycobacterium tuberculosis sequencing and mapping teams, Sanger
Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA
Unite de Genetique Moleculaire Bacterienne, Institut Pasteur, 28
rue du Docteur Roux, 75724 Paris Cedex 15, France E-mail:
parkhill@sanger.ac.uk
REFERENCE 5 (bases 1 to 4411532)
AUTHORS Lew J.M.
JOURNAL Submitted (18-DEC-2012) to the INSDC. Lew J., Ecole Polytechnique
Federale de Lausanne, CH-1015, Lausanne, Switzerland, and the Swiss
Institute of Bioinformatics, CMU - Rue Michel-Servet 1, 1211 Geneva
4, SWITZERLAND
COMMENT On or before Feb 1, 2013 this sequence version replaced
gi:41352722, gi:38490165, gi:38490207, gi:41353619, gi:38490250,
gi:38684030, gi:38490288, gi:41353667, gi:41353422, gi:41352756,
gi:38490319, gi:41352785, gi:38490370, gi:41353971.
Note:
This annotation is from the TubercuList website, Release 26, Dec
2012 (URL: http://tuberculist.epfl.ch) (email:
tuberculist@epfl.ch).
FEATURES Qualifiers
source /organism="Mycobacterium tuberculosis H37Rv"
/strain="H37Rv"
/mol_type="genomic DNA"
/db_xref="taxon:83332"
protein /transl_table=11
/locus_tag="Rv0944"
/note="Rv0944, (MTCY10D7.30c), len: 158 aa. Possible
formamidopyrimidine-DNA glycosylase, similar to C-terminus
of formamidopyrimidine-DNA glycosylases e.g.
CAB63194.1|AL133469 putative formamidopyrimidine-DNA
glycosylase from Streptomyces coelicolor (287 aa);
FPG_LACLA|NP_266509.1|NC_002662 formamidopyrimidine-DNA
glycosylase from Lactococcus lactis subsp. lactis (273
aa),FASTA scores: opt: 246, E(): 2.4e-09, (28.9% identity
in 142 aa overlap); O50606|FPG_THETH|MUTM|FPG
formamidopyrimidine-DNA glycosylase from Thermus
thermophilus (267 aa); etc. Also similar to C-termini of
endonucleases or DNA glycosylases of Mycobacterium
tuberculosis e.g. Rv3297, Rv2464c, Rv2924c. May belong to
the FPG family."
/db_xref="EnsemblGenomes-Gn:Rv0944"
/db_xref="EnsemblGenomes-Tr:CCP43692"
/db_xref="GOA:L0T864"
/db_xref="InterPro:IPR000214"
/db_xref="InterPro:IPR010663"
/db_xref="InterPro:IPR010979"
/db_xref="InterPro:IPR015886"
/db_xref="UniProtKB/Swiss-Prot:L0T864"
/experiment="EXISTENCE: identified in proteomics study"
BEGIN
1 MAGTPQPRAL GPDALDVSTD DLAGLLAGNT GRIKTVITDQ KVIAGIGNAY SDEILHVAKI
61 SPFATAGKLS GAQLTCLHEA MASVLSDAVR RSVGQGAAML KGEKRSGLRV HARTGLPCPV
121 CGDTVREVSF ADKSFQYCPT CQTGGKALAD RRMSRLLK
//