LOCUS CCO25609.1 1801 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans ZM domain-containing protein protein. ACCESSION BX284606-2763 PROTEIN_ID CCO25609.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="hpo-34" /locus_tag="CELE_F29G6.3" /standard_name="F29G6.3f" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00009259" /db_xref="EnsemblGenomes-Tr:F29G6.3f" /db_xref="UniProtKB/TrEMBL:K8FDY0" /db_xref="WormBase:WBGene00009259" intron_pos 10:1 (1/10) intron_pos 44:0 (2/10) intron_pos 62:0 (3/10) intron_pos 89:0 (4/10) intron_pos 111:0 (5/10) intron_pos 144:2 (6/10) intron_pos 184:0 (7/10) intron_pos 219:0 (8/10) intron_pos 253:0 (9/10) intron_pos 289:0 (10/10) BEGIN 1 MMETRNASDS LMDQVFSAVT LPAVGQTTTI MEHHQESHTV FHQESHHVES HHEHMEFSSS 61 GVIVGNVVGH DAVIQRRPTV DTEDQRSEVS AMSKATSVSV HSSVSQKSAQ HYDLPPIPQY 121 DMPPIVVGEA VVGKAPSVAS SRSGSHHSVA SHHSHHSQHS HHSALTHDSE STISEGTLVN 181 EPIVVGAHVA SEAPTPLAVG QSFEHDAVIE QFKNLHGRDQ SVVSSIVPAS VHIQSDSEDS 241 IAPSKLTHSI AVGGVVDSHN GVNVLHRSHE VEFVDFAAPA YYQPPSVVGA FDAHSEDSFG 301 FEKVEYVDTH EDHHHKLEEQ VPQVVHEHVI EQHYEPYQIV HENHNVLSVD FGEDQHSITH 361 HDHDHHHHHH ESHVTHTFTS NVKQSRSNTA STYQSRQMLA HNVGPKITEE LRPAAVLEEE 421 EVEVRPPVMA YVAPIPVKPP RTHEESHIYN AYETEIHQQK DIVKSTTVVL EDVRSGSEGI 481 HIRADNSSSV DIIGVSSLRR KFEHGAPPPL SPVFEMKKHE HHKHLDQHHH HKHQDVVVEQ 541 TQFQVGDNFI SSSSSKAIEN HYDVPFDSYE IVDKSENTKK SSSSYHASSS YHKQAPPLPL 601 VDYHVYDTPT VEHFSHSPAF YTDDQRHHYV PQIKVITEYR HINPRHHYVE RQIRKADGSA 661 IAQSPQVQTI DYFKEINRAH HFVPSTPPSL FNNKRESFHH HSFIPNSLEA ERKSRSVERA 721 HHYLPDSPAN VKDQRKIIRE HHYVPLEKRS QSLDLKVVHP EHHYVPLVRK TTEDHQQKVN 781 HEHHFIPAEK KTEAVKDVVH EHHYIPLTAH KTDEHNVNIT REHHYIPLKT EQVQSKTEIE 841 RHNQYVPMTT HKETKSFDTG RSHSYIPLGG NVEQSKTEIF RQHNFVPVVD KKEKNVEEIN 901 QKHNYVPAHS NVAVSDKEPI SRHHNFVPLA TKTVEETRHS NDLSHHHYMP LPAKREEGKT 961 AAGDKVGYEH HYYPLASNTE RVSVHKGQEH HYVPLIAKPT ESHASKIVIQ HQYIPLAMRH 1021 QSVPRLPSEH NYIPIAIHDD SHQKVDLTNH QYLPPIVNAE QKEAVKLYEH QYVPLPPKKD 1081 SFAVRKLEGK DHHYVPLVQN YSSKAPQLPR EHHYYPAPVR SVEHHQKHVH EQHNYIPAVH 1141 HHETNHQLDR QHGYIPVAAK HEAKKNVLYE HQYIPPITRT EQTNGYDRRH NYVPVGKTAK 1201 ATTTDIHVHQ DHQYVPQASP RKTISEVNRS HNYIPALPPK EHQSRHEHYQ SHSYLPPSQK 1261 STSHQSPPKL INHSFVPQIP HKTKDNQVVH EHGYVPPVKK SDLKTSVDHS KHEYLPSVVH 1321 TESKDDFKHS KHGYVPSLEH SQRIERGVVS THNYVPPVTK IIEKNASDPT KHGYLPQSKR 1381 SKSSDQIDHS KHGFLPSIKH QEAQDHADHS RHGYVPPTKK AHNDYWGFER DHHYVPDTLK 1441 KDKIKQIHRE HNFVPSVVPA KPDEKFEGQD HHYVPSVRKT TGITSEIEHR HNFVEKIPSK 1501 HETPKLPETH NYVPTVHKSQ NLDRSTLEKH NYVPTYQKKF EPRRTDIRHH NYVPTIVKPH 1561 EHRDNFDHHH YVPQIAKPSD VKLSDYDKHH YVPPVFEKSV VNQVEYEHKY TPTVVKSTEP 1621 RILNHTQHHY TPSHQIVSNT YDDIDTHHGY LPQIPRKETA ARVPLGHHFV PQIPHKEVAP 1681 DYDHHHHYVP SVQPKAPTPA VDYQHHYLPS VKKPTSTTTD MIRQQRKKIL KSTDDDEDQE 1741 NQYVAKPPVY TNAFVKPYKT IPDEPTNYML KNGKSRNNGI PEEPSQPVPK PRSFTSPQPD 1801 Y //