LOCUS CCG28123.1 1130 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Ion_trans_2 domain-containing protein
protein.
ACCESSION BX284606-2722
PROTEIN_ID CCG28123.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="slo-2"
/locus_tag="CELE_F08B12.3"
/standard_name="F08B12.3h"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004831"
/db_xref="EnsemblGenomes-Tr:F08B12.3h"
/db_xref="GOA:H9G2R7"
/db_xref="InterPro:IPR003929"
/db_xref="InterPro:IPR013099"
/db_xref="UniProtKB/TrEMBL:H9G2R7"
/db_xref="WormBase:WBGene00004831"
intron_pos 13:1 (1/18)
intron_pos 61:2 (2/18)
intron_pos 87:1 (3/18)
intron_pos 135:2 (4/18)
intron_pos 172:0 (5/18)
intron_pos 197:0 (6/18)
intron_pos 225:0 (7/18)
intron_pos 372:0 (8/18)
intron_pos 415:2 (9/18)
intron_pos 475:1 (10/18)
intron_pos 511:2 (11/18)
intron_pos 561:2 (12/18)
intron_pos 828:2 (13/18)
intron_pos 943:0 (14/18)
intron_pos 971:0 (15/18)
intron_pos 1012:0 (16/18)
intron_pos 1053:1 (17/18)
intron_pos 1082:2 (18/18)
BEGIN
1 MDDIYEEYFD NDDIARTDSE AEGTVYKNSY ASLMNELQPT TSFDDFKQSI TQLTDIFRAD
61 PARMQYGEKK NIKHKLQQWF IENPSISARI RSCNVLIKLL TCILYCIRVV NDERSYPDDF
121 PFSEEEAGKQ DVTLYKYLLW VDFDFKIWFL QTMFACISMV YTILVFYLSY SGSVVRLLIN
181 IHFLLELITS FPFIISIFIP SLTYLYVPVF LNCWLAKGAL QAMMNDLNRK SFISSSALFR
241 QLLLLFSVLA CLIFTGMCSI EHLQRARGKR IDLFTSFYFV MVTFSTVGYG DWYPDYWASQ
301 LCVVILICVA LGLIPKQLDE LGQTWSERQK SGTDFSSWNG VESHVVVTIT TLEVEFIRDF
361 LEEFYAHPEN QRIQIVLLSP AELDNQTRML LKIPLWNNRV HYVRGSSLRD EDLERANVAT
421 SKACFILSAR HVNRKVATDE HTILRSWAIK DFAPNVKQYV QIFRAETKMH IEHAEVLICE
481 DEFKYALLAN NCICPGISTF ITLLMHTSRG EEGQKSTEPW HKVYGFHSGN EMYQIKVQDS
541 KFFCEYVGKS FSSTSFHAHK EYGIGLIAVS PDGDTSRMKL NPGSSHIIQP TDTVYYMGLT
601 NEESLTDFRK GIRSQQKRAN VASTIANIGT VAVDVPRSDK TELVGRKKKK RKEKAADEIH
661 LIEVGEHVQS SRRPSIAMVT EGKIDSSSDS DQEEICDKCR GPCIQHKLQR TYPQVRTYIG
721 TSNTVCHMMK ERRSLCCLKL DEKCAHKSAT SAHEYQWRNR PIILAADRTS SGMYNLVIPL
781 RAYYRPVHDL HPIIILLELE EQDSLNDAFL DAISYFPDVY WMKGKVGNLD CLLRAGVSSA
841 EHVVVVKETA VMAEEHTADC NTIITVQKIH RMFPRLRMIT ELTHATNMRF VQFNPHNAYS
901 LAQSRFEKKE RKRGSHMPFM FRLPFAQGGV FSANMLDRLL YQAIIKPFVV DLVRLLLGID
961 QHSDGGYLTS FVITSDDLWI RNYGRLYQKL CSSVADIPIG IFRTKKMDTK TVSLDLQEQC
1021 KDFENTEMGR NKDMYDHVKN RMRLLNIKDT HTLLEGSDEK SQISYVIINP AQDLELESGD
1081 IVYVIRSPIR KDATNARINP RRGLRRSKNV SETIDSTNQV PTIVIDENNL
//