LOCUS CCG28122.1 1140 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Ion_trans_2 domain-containing protein
protein.
ACCESSION BX284606-2719
PROTEIN_ID CCG28122.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="slo-2"
/locus_tag="CELE_F08B12.3"
/standard_name="F08B12.3e"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004831"
/db_xref="EnsemblGenomes-Tr:F08B12.3e"
/db_xref="GOA:H9G2R6"
/db_xref="InterPro:IPR003929"
/db_xref="InterPro:IPR013099"
/db_xref="UniProtKB/TrEMBL:H9G2R6"
/db_xref="WormBase:WBGene00004831"
intron_pos 7:0 (1/19)
intron_pos 23:1 (2/19)
intron_pos 71:2 (3/19)
intron_pos 97:1 (4/19)
intron_pos 145:2 (5/19)
intron_pos 182:0 (6/19)
intron_pos 207:0 (7/19)
intron_pos 235:0 (8/19)
intron_pos 382:0 (9/19)
intron_pos 425:2 (10/19)
intron_pos 485:1 (11/19)
intron_pos 521:2 (12/19)
intron_pos 571:2 (13/19)
intron_pos 838:2 (14/19)
intron_pos 953:0 (15/19)
intron_pos 981:0 (16/19)
intron_pos 1022:0 (17/19)
intron_pos 1063:1 (18/19)
intron_pos 1092:2 (19/19)
BEGIN
1 METQKKVLPP KLQEERRRLL ESDIARTDSE AEGTVYKNSY ASLMNELQPT TSFDDFKQSI
61 TQLTDIFRAD PARMQYGEKK NIKHKLQQWF IENPSISARI RSCNVLIKLL TCILYCIRVV
121 NDERSYPDDF PFSEEEAGKQ DVTLYKYLLW VDFDFKIWFL QTMFACISMV YTILVFYLSY
181 SGSVVRLLIN IHFLLELITS FPFIISIFIP SLTYLYVPVF LNCWLAKGAL QAMMNDLNRK
241 SFISSSALFR QLLLLFSVLA CLIFTGMCSI EHLQRARGKR IDLFTSFYFV MVTFSTVGYG
301 DWYPDYWASQ LCVVILICVA LGLIPKQLDE LGQTWSERQK SGTDFSSWNG VESHVVVTIT
361 TLEVEFIRDF LEEFYAHPEN QRIQIVLLSP AELDNQTRML LKIPLWNNRV HYVRGSSLRD
421 EDLERANVAT SKACFILSAR HVNRKVATDE HTILRSWAIK DFAPNVKQYV QIFRAETKMH
481 IEHAEVLICE DEFKYALLAN NCICPGISTF ITLLMHTSRG EEGQKSTEPW HKVYGFHSGN
541 EMYQIKVQDS KFFCEYVGKS FSSTSFHAHK EYGIGLIAVS PDGDTSRMKL NPGSSHIIQP
601 TDTVYYMGLT NEESLTDFRK GIRSQQKRAN VASTIANIGT VAVDVPRSDK TELVGRKKKK
661 RKEKAADEIH LIEVGEHVQS SRRPSIAMVT EGKIDSSSDS DQEEICDKCR GPCIQHKLQR
721 TYPQVRTYIG TSNTVCHMMK ERRSLCCLKL DEKCAHKSAT SAHEYQWRNR PIILAADRTS
781 SGMYNLVIPL RAYYRPVHDL HPIIILLELE EQDSLNDAFL DAISYFPDVY WMKGKVGNLD
841 CLLRAGVSSA EHVVVVKETA VMAEEHTADC NTIITVQKIH RMFPRLRMIT ELTHATNMRF
901 VQFNPHNAYS LAQSRFEKKE RKRGSHMPFM FRLPFAQGGV FSANMLDRLL YQAIIKPFVV
961 DLVRLLLGID QHSDGGYLTS FVITSDDLWI RNYGRLYQKL CSSVADIPIG IFRTKKMDTK
1021 TVSLDLQEQC KDFENTEMGR NKDMYDHVKN RMRLLNIKDT HTLLEGSDEK SQISYVIINP
1081 AQDLELESGD IVYVIRSPIR KDATNARINP RRGLRRSKNV SETIDSTNQV PTIVIDENNL
//