LOCUS CCG28119.1 1125 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Ion_trans_2 domain-containing protein
protein.
ACCESSION BX284606-2720
PROTEIN_ID CCG28119.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="slo-2"
/locus_tag="CELE_F08B12.3"
/standard_name="F08B12.3f"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004831"
/db_xref="EnsemblGenomes-Tr:F08B12.3f"
/db_xref="GOA:H9G2R3"
/db_xref="InterPro:IPR003929"
/db_xref="InterPro:IPR013099"
/db_xref="UniProtKB/TrEMBL:H9G2R3"
/db_xref="WormBase:WBGene00004831"
intron_pos 8:1 (1/18)
intron_pos 56:2 (2/18)
intron_pos 82:1 (3/18)
intron_pos 130:2 (4/18)
intron_pos 167:0 (5/18)
intron_pos 192:0 (6/18)
intron_pos 220:0 (7/18)
intron_pos 367:0 (8/18)
intron_pos 410:2 (9/18)
intron_pos 470:1 (10/18)
intron_pos 506:2 (11/18)
intron_pos 556:2 (12/18)
intron_pos 823:2 (13/18)
intron_pos 938:0 (14/18)
intron_pos 966:0 (15/18)
intron_pos 1007:0 (16/18)
intron_pos 1048:1 (17/18)
intron_pos 1077:2 (18/18)
BEGIN
1 MPYVPFLYIA RTDSEAEGTV YKNSYASLMN ELQPTTSFDD FKQSITQLTD IFRADPARMQ
61 YGEKKNIKHK LQQWFIENPS ISARIRSCNV LIKLLTCILY CIRVVNDERS YPDDFPFSEE
121 EAGKQDVTLY KYLLWVDFDF KIWFLQTMFA CISMVYTILV FYLSYSGSVV RLLINIHFLL
181 ELITSFPFII SIFIPSLTYL YVPVFLNCWL AKGALQAMMN DLNRKSFISS SALFRQLLLL
241 FSVLACLIFT GMCSIEHLQR ARGKRIDLFT SFYFVMVTFS TVGYGDWYPD YWASQLCVVI
301 LICVALGLIP KQLDELGQTW SERQKSGTDF SSWNGVESHV VVTITTLEVE FIRDFLEEFY
361 AHPENQRIQI VLLSPAELDN QTRMLLKIPL WNNRVHYVRG SSLRDEDLER ANVATSKACF
421 ILSARHVNRK VATDEHTILR SWAIKDFAPN VKQYVQIFRA ETKMHIEHAE VLICEDEFKY
481 ALLANNCICP GISTFITLLM HTSRGEEGQK STEPWHKVYG FHSGNEMYQI KVQDSKFFCE
541 YVGKSFSSTS FHAHKEYGIG LIAVSPDGDT SRMKLNPGSS HIIQPTDTVY YMGLTNEESL
601 TDFRKGIRSQ QKRANVASTI ANIGTVAVDV PRSDKTELVG RKKKKRKEKA ADEIHLIEVG
661 EHVQSSRRPS IAMVTEGKID SSSDSDQEEI CDKCRGPCIQ HKLQRTYPQV RTYIGTSNTV
721 CHMMKERRSL CCLKLDEKCA HKSATSAHEY QWRNRPIILA ADRTSSGMYN LVIPLRAYYR
781 PVHDLHPIII LLELEEQDSL NDAFLDAISY FPDVYWMKGK VGNLDCLLRA GVSSAEHVVV
841 VKETAVMAEE HTADCNTIIT VQKIHRMFPR LRMITELTHA TNMRFVQFNP HNAYSLAQSR
901 FEKKERKRGS HMPFMFRLPF AQGGVFSANM LDRLLYQAII KPFVVDLVRL LLGIDQHSDG
961 GYLTSFVITS DDLWIRNYGR LYQKLCSSVA DIPIGIFRTK KMDTKTVSLD LQEQCKDFEN
1021 TEMGRNKDMY DHVKNRMRLL NIKDTHTLLE GSDEKSQISY VIINPAQDLE LESGDIVYVI
1081 RSPIRKDATN ARINPRRGLR RSKNVSETID STNQVPTIVI DENNL
//