LOCUS CCG28088.1 1029 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Rap-GAP domain-containing protein protein.
ACCESSION BX284602-3117
PROTEIN_ID CCG28088.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="hgap-2"
/locus_tag="CELE_D2085.5"
/standard_name="D2085.5f"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00008430"
/db_xref="EnsemblGenomes-Tr:D2085.5f"
/db_xref="GOA:H9G2Q4"
/db_xref="InterPro:IPR035974"
/db_xref="InterPro:IPR039930"
/db_xref="UniProtKB/TrEMBL:H9G2Q4"
/db_xref="WormBase:WBGene00008430"
intron_pos 4:1 (1/13)
intron_pos 50:1 (2/13)
intron_pos 209:1 (3/13)
intron_pos 342:1 (4/13)
intron_pos 377:0 (5/13)
intron_pos 418:0 (6/13)
intron_pos 557:1 (7/13)
intron_pos 584:2 (8/13)
intron_pos 674:2 (9/13)
intron_pos 757:1 (10/13)
intron_pos 900:1 (11/13)
intron_pos 955:2 (12/13)
intron_pos 994:2 (13/13)
BEGIN
1 MLVDVISGLS LHSVDLDDIP DAMSPMMGRS DSNAVLSGGH NAVGRRKSVG SSCSSVAGES
61 DVMSSTSTAG GHSQKHPEDY QQVDGVTAGR AAALASLIRI ITSKSSNEKI PNSQLSNFYA
121 TVFQCLVEKE RVMLCTLFYY GRNLFRLGLP GIESLLPHFL FALDIVMIES SKLRLHPSIS
181 EVEVRRACLR ALSSVICWPT TFGMSKIPQI AEAANLKSNA ATYLHLRSRI FKTLMFSVRN
241 ETDPTNLHIA LSLCAVLVEE SCQFDLGLNE EQTKEMIRIS TTASSSGQPE KGLCASIVRG
301 VLSAICDKFG RIETIDHSTA LAIIDVLNCI SHVHHTVLFN NMDVSTGTLV IASLCRFIEQ
361 QLNKPPPMHS KDLHSTVVAA YNAVAVWLTA SPLLAECVGV LGTVCDVIQL GVTGSKTSPD
421 LQKSRGETVK PKAASQRVLE AAEALMYTLF CVVGRKPGPL RDEKRLVHKY GPNRINTSKF
481 LHVLVNGDTL LSLHEASHID DIPSDSASVV YVRRSPMQGA NTGIARLRPK PENYHPEVGI
541 PPMTPMSAAS TTEGFEGPNT PKVQKSIGEQ FVIPPEFYKN SCKLDNAFRN LESTTETEAI
601 AEEMKQQNSQ NGRSFFDESR RNNVFERMRP EERIVAPSKP LDTCSSIRMM LYDFGLINER
661 IFGSEIVLLD SSMSEKFYRD LHETVDCAPA RTQLTAHIFY VKEGQRIAVD ILENALNVQN
721 SCSDFCMFLA NLGEGIEIGV HDTWTGHWST AYSTERKLQE EADGVDHYIV DGIQHALWWC
781 DEQGSNSELA FLMPTERSVR MFKQNITSPA SSSRRGSNNN RSIVSDDKSF DSTHTDNGMM
841 LNARRLGEKS PSNLSDRDFR PYAGGGSSMG HGSVGRRTGA LKIMLVWLER PEDMTSFPIY
901 ELIGTCDDGT DLLNGGAQKP EIGGATNSQV AHHIIFIHLV EPGIVQIRTR GTVNRFGEAG
961 PLVDGVVVSL ANLPSFIRNT ILNTSRRDVA EIENYTFPHT RRKQAIVEFA KKYAAKTSYE
1021 EFLVNVIQN
//