LOCUS CCF23434.1 957 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Degenerin-like protein unc-105 protein.
ACCESSION BX284602-2897
PROTEIN_ID CCF23434.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="unc-105"
/locus_tag="CELE_C41C4.5"
/standard_name="C41C4.5h"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00006832"
/db_xref="EnsemblGenomes-Tr:C41C4.5h"
/db_xref="GOA:H2FLG0"
/db_xref="InterPro:IPR001873"
/db_xref="InterPro:IPR004726"
/db_xref="InterPro:IPR020903"
/db_xref="UniProtKB/TrEMBL:H2FLG0"
/db_xref="WormBase:WBGene00006832"
intron_pos 51:1 (1/13)
intron_pos 101:1 (2/13)
intron_pos 141:2 (3/13)
intron_pos 176:0 (4/13)
intron_pos 239:1 (5/13)
intron_pos 322:1 (6/13)
intron_pos 479:2 (7/13)
intron_pos 567:0 (8/13)
intron_pos 674:2 (9/13)
intron_pos 777:2 (10/13)
intron_pos 828:0 (11/13)
intron_pos 888:2 (12/13)
intron_pos 918:2 (13/13)
BEGIN
1 MENASSTAQL SIDIEDNGQA AQLPPQPPSR HHQWAQDQNR KNMSFEKSGH ATRNASEDSK
61 NIRFLGDHAP PSGARKRSHN KRLHDWRRRL SVNPELLRRH GLRNIRMNGH LDWNQLRKSF
121 EKQSTFHGIS HAATADGKWR WFWYTAFTIC LLALLIQIFF LISKYRQYGK TVDLDLKFEN
181 APFPSITICN LNPYKKSAIQ SNPNTKAMME AYSRRIGSGD KTEGIAAALS ATGGLHAKVR
241 RAKRKAKGKP RLRDRRYHQA FAQCLCDIEQ LTGDRKGSCF AAFKGKIEID TNNTAGFMNL
301 HTSRCLCQLD TVSKALWPCF PYSSWKEKLC SECVDNTGHC PMRFYKGNEL YENIKEQVDL
361 CLCHKEYNHC VSTRDDGIIL EISPNDELND LDIGKKIASQ LSAQQEKQAE VTTTEAPTVT
421 QALGFEELTD DIAITSQAQE NLMFAVGEMS EKAKESMSYE LDELVLKCSF NQKDCQMDRD
481 FTLHYDNTFG NCYTFNYNRT AEVASHRAGA NYGLRVLLYA NVSEYLPTTE AVGFRITVHD
541 KHIVPFPDAF GYSAPTGFMS SFGVRMKQFI RLEPPYGHCR HGGEDAATFV YTGFQYSVEA
601 CHRSCAQKVI VEACGCADPM YPVAEMFGNN TKPCQAVNMD QRECLRNTTL WLGELYSKGK
661 EAIIPDCYCH QPCQETNYEV TYSSARWPSG SAKVMECLPG DFLCLEKYRK NAAMVQIFYE
721 ELNYETMQES PAYTLTSVLA DLGGLTGLWI GASVVSLLEI VTLIVFATQA YVRKRKGVSL
781 NTLHKSSTTQ SVKLSVMDIR SIKSIHSNHS SKSKQSILIE DLPPAIQEQS DDEEETTESS
841 RTNGSCRYLA PGEDLPCLCK YHPDGSIRIM KALCPVHGYM VRRNYDYSVS NSEEEDAEDE
901 VHREPEPFYS APYEHRKKSH PHKKSVHKKS TTALDEDLAM EAHNDPDGNR PVSPEEP
//