LOCUS CCF23337.1 816 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Histone deacetylase 4 protein. ACCESSION BX284606-3917 PROTEIN_ID CCF23337.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="hda-4" /locus_tag="CELE_C10E2.3" /standard_name="C10E2.3b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00001837" /db_xref="EnsemblGenomes-Tr:C10E2.3a" /db_xref="WormBase:WBGene00001837" intron_pos 61:1 (1/9) intron_pos 102:2 (2/9) intron_pos 237:2 (3/9) intron_pos 286:1 (4/9) intron_pos 322:1 (5/9) intron_pos 537:0 (6/9) intron_pos 594:0 (7/9) intron_pos 742:0 (8/9) intron_pos 773:0 (9/9) BEGIN 1 MDLIGHFQRA QQELSVQHMH NLYAALQQQQ QLQNLQTERS AVNPLLISQQ HSTEDQNSGP 61 AAPLSLANSL TNLLSSSNGN LSVPQTPTKE HHPTAPTSNR KCDLPRSNST TISQLTKDRL 121 KNMIANRSKG ESNSQSNLMS NSVTANGNGH DNGRKLKNSN SQVNVSSPHF EPYRLPTSLA 181 NAHNLQQASE FQLRKVNSEP NLKMRIRAKL LSKGSSPVQH VQQNNSQFNF THPQLKRSDS 241 ETSQNVPLDF MQSSSQTNLP HLMLPSPSLP NLAAAGAFHG LNLPVGQDLN AFMAVANLSP 301 FLSLPSLLNK KLELGGLTDE GDRNGLIGSS STSSLASNVS MGSHQYQSLL KQQIRDLVLR 361 RKSLVREDPE GEGLAELYNG LLPQAKLQQL QALAAESGFL AKQEPTCTTG LGYDQAMVRH 421 ECCCGNNASH VENGGRIQSI WSKLIEHGHV QKCEKVTAKK ASLEQLQLVH SQTYTTFFAV 481 SPTACLKIDA NSLPLKRFLQ LPCGGIGVDS DTYFNDASTQ TAARLAAGTL IELSSQVAEG 541 RLKNGFACIR PPGHHAEHEQ AMGFCFFNNV AVAVKVLQTK YPAQCAKIAI IDWDVHHGNG 601 TQLSFENDPN VLYMSLHRHD KGNFFPGTGS VTEVGKNDAK GLTVNVPFSG DVMRDPEYLA 661 AWRTVIEPVM ASFCPDFIIV SAGFDACHGH PNALGGYEVT PEMFGYMTKS LLNYASGKVV 721 LALEGGYDLK SISEAAQQCV QALIGESDDA GRLSSVALES LPNPSAVETL QKVIAIHKSY 781 WPALHGQEAA INTTEMQWRN LKLQVQMQQQ QQQQQT //