LOCUS CCD74424.2 899 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Gamma-aminobutyric acid type B
receptor subunit 1 protein.
ACCESSION BX284606-629
PROTEIN_ID CCD74424.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="gbb-1"
/locus_tag="CELE_Y41G9A.4"
/standard_name="Y41G9A.4b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00021528"
/db_xref="EnsemblGenomes-Tr:Y41G9A.4b"
/db_xref="GOA:H2L0Q3"
/db_xref="InterPro:IPR001828"
/db_xref="InterPro:IPR002455"
/db_xref="InterPro:IPR002456"
/db_xref="InterPro:IPR017978"
/db_xref="InterPro:IPR028082"
/db_xref="UniProtKB/Swiss-Prot:H2L0Q3"
/db_xref="WormBase:WBGene00021528"
intron_pos 77:0 (1/19)
intron_pos 122:0 (2/19)
intron_pos 154:2 (3/19)
intron_pos 185:0 (4/19)
intron_pos 234:0 (5/19)
intron_pos 272:0 (6/19)
intron_pos 332:2 (7/19)
intron_pos 379:0 (8/19)
intron_pos 448:0 (9/19)
intron_pos 477:2 (10/19)
intron_pos 524:0 (11/19)
intron_pos 566:0 (12/19)
intron_pos 610:0 (13/19)
intron_pos 651:0 (14/19)
intron_pos 678:1 (15/19)
intron_pos 749:1 (16/19)
intron_pos 814:0 (17/19)
intron_pos 851:1 (18/19)
intron_pos 878:1 (19/19)
BEGIN
1 MFVRSSWLLL WGTIVWASAE PVTLHIGGTF PMESGSGGWA GGEACLPAVE MALKDVNSRL
61 DILPGYVLNM TNHNSQCQPG LAMQQLYDFL YKPPTKLMLL TGCSPVTTVI AEAAPVWKLV
121 VLSYGGSSPA LSNRNRFPTL FRTHPSANMQ NPTRIHIMEK FKWKRFTILM SVEEVFVTTA
181 KDLEAIARKK GIKVDRQSFY GDPTDAMKTL QRQDARIIVG LFYVTEARKV LCQAYHHGLY
241 GRRYVWFFIG WYADTWYIPP PEEHLNCTAE QMTEAAEYHF TTESVMLSRD NIPAISEMTG
301 MQFQQRLTQY FQKDTANVGG FPEAPLAYDA VWALALAFNC TRNNLPSHIR LENFTYDNKV
361 IADTLFQCVK NTSFRGVSGK VMFSDSGDRI ARTQIEQMQG GKYKIMGYYD TTSGDLEWYN
421 KEQWLNGKGP PPDSTVIKKH AMTVSNEFYY PTILFAVLGI AACVFIYLFT QKHHERLIIF
481 QSQPECNNIL LIGCSLCLFS LFLIGLPSDD ISISESLFPL LCHARVTILL FGFTFAYGSM
541 FAKVWIVHRM GATENQQLAS RQKDEEENTP WEGIRTLIST MVGRQALMRK SSGQAYGALL
601 EKRNTVLNQP ISSSKFYVIV AALTAVDVFV CFVWVLIDPL HLTEQKFPLF TPADSEEDEM
661 IMPVLQQCQS NQQEVWIGII MGFKCLLLVF GTFLSYETRN LKLRFINDSR FVGLAIYNVA
721 VMTLVTAPVV TLLIHGKVDA NFAFISLTVL ICTYISVGLI YGPKIRHIIK VPPSADEIQL
781 NGNVGPGVMS KVDQKRYDML KKENETLQIQ IEEKERKIHE CKERLEELTK NSETEDMNAQ
841 LLCENDKQIA DENLTYSTAT TLTTTIPLID LQNGNHPGQI YENDNDDDGS STSSDEILL
//