LOCUS CCD74386.2 1911 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EF-hand domain-containing protein protein.
ACCESSION BX284606-592
PROTEIN_ID CCD74386.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="unc-2"
/locus_tag="CELE_T02C5.5"
/standard_name="T02C5.5c"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00006742"
/db_xref="EnsemblGenomes-Tr:T02C5.5c"
/db_xref="GOA:Q8MPY5"
/db_xref="InterPro:IPR002048"
/db_xref="InterPro:IPR002077"
/db_xref="InterPro:IPR005821"
/db_xref="InterPro:IPR014873"
/db_xref="InterPro:IPR027359"
/db_xref="InterPro:IPR031649"
/db_xref="UniProtKB/TrEMBL:Q8MPY5"
/db_xref="WormBase:WBGene00006742"
intron_pos 64:2 (1/26)
intron_pos 107:1 (2/26)
intron_pos 198:1 (3/26)
intron_pos 262:2 (4/26)
intron_pos 292:2 (5/26)
intron_pos 360:1 (6/26)
intron_pos 379:2 (7/26)
intron_pos 422:1 (8/26)
intron_pos 565:0 (9/26)
intron_pos 605:1 (10/26)
intron_pos 676:1 (11/26)
intron_pos 772:0 (12/26)
intron_pos 807:2 (13/26)
intron_pos 843:0 (14/26)
intron_pos 1104:0 (15/26)
intron_pos 1321:2 (16/26)
intron_pos 1425:1 (17/26)
intron_pos 1455:0 (18/26)
intron_pos 1526:0 (19/26)
intron_pos 1559:2 (20/26)
intron_pos 1589:0 (21/26)
intron_pos 1607:0 (22/26)
intron_pos 1647:1 (23/26)
intron_pos 1744:1 (24/26)
intron_pos 1794:1 (25/26)
intron_pos 1856:0 (26/26)
BEGIN
1 MEQHLPKNDK KALSEWLERT EPYFMGIFCL ECVLKVIAFG FALHKGSYLR SGWNIMDFIV
61 VVSGVVTMLP FSPATQTANQ PVDSVDLRTL RAVRVLRPLK LVSGIPSLQV VLKSILCAMA
121 PLLQIGLLVL FAIIIFAIIG LEFYSGAFHS ACYNERGEIE NVSERPMPCT NKTSPMGVYN
181 CDVKGTTCLQ KWIGPNYGIT SFDNIGFAMI TVFQCITMEG WTTVMYYTND SLGSTYNWAY
241 FIPLIVLGSF FMLNLVLGVL SGEFAKERER VENRREFLKL RRQQQIEREL NGYLEWILTA
301 EEVILKEDRT TEEEKAAIME ARRRAANKKL KQASKQQSTE TEEDFEEDED EMEEEYVDEA
361 ERKKRGCCHS VGKFIKQLRI QIRIMVKTQI FYWSVITLVF LNTCCVASEH YGQPQWFTDF
421 LKYAEFVFLG IFVVEMLLKL FAMGSRTYFA SKFNRFDCVV IVGSAAEVIW AEVYGGSFGI
481 SVMRALRLLR IFKLTSYWVS LRNLVRSLMN SMRSIISLLF LLFLFILIFA LLGMQLFGGR
541 FNFPTMHPYT HFDTFPVALI TVFQILTGED WNEVMYLAIE SQGGIYSGGW PYSIYFIVLV
601 LFGNYTLLNV FLAIAVDNLA NAQELTAAEE ADEKANEIEE ESEELDEQYQ EGDHCTIDME
661 GKTAGDMCAV ARAMDDLDEE CEEEESPFGG PKPMVPYSSM FFLSPTNPFR VLIHSIVCTK
721 YFEMMVMTVI CLSSVSLAAE DPVDEENPRN KVLQYMDYCF TGVFACEMLL KLIDQGILLH
781 PGSYCRDFWN ILDGIVVTCA LFAFGFAGTE GSAGKNLNTI KSLRVLRVLR PLKTIKRIPK
841 LKAVFDCVVN SLKNVFNILI VYFLFQFIFA VIAVQLFNGK FFFCTDKNRK FANTCHGQFF
901 VYDNQNDPPR VEQREWRLRP FNYDNTINAM LTLFVVTTGE GWPGIRQNSM DTTFEDQGPS
961 PFFRVEVALF YVMFFIVFPF FFVNIFVALI IITFQEQGEA ELSEGDLDKN QKQCIDFALN
1021 ARPRSLFMPE DKNSTKYRIW RLVTSPPFEY FIMTMICCNT LILMMKYYNN PLFYEEILRL
1081 FNTALTAVFT VESILKILAF GVRNYFRDGW NRFDFVTVVG SITDALVTEF GGHFVSLGFL
1141 RLFRAARLIR LLQQGYTIRI LLWTFVQSFK ALPYVCLLIG MLFFIYAIVG MQVFGNIWLN
1201 AATEINRHNN FQSFFNAVIL LFRCATGEGW QDIMMAAVQG KDCARAGSAE INFEKGQTCG
1261 SNVSYAYFTS FVFLSSFLML NLFVAVIMDN FDYLTRDSSI LGPHHLDEFI RVWADYDPAA
1321 TGRIHYSEMY EMLRIMAPPV GFGKKCPYRL AYKHLIRMNM PVAEDGTVHF TTTLFALIRE
1381 SLSIKMRPVE EMDEADEELR LTLKKIWPLK AKKNMVDLVV PPNHELCFQK LTVGKIYAGL
1441 LILENYRARK SGTEVGGQGL FGGGLRSLVA AAKAAESQHS SHTPQPPEET TPIIPQHAQQ
1501 FSAAPTMSAQ GSLQQMQGTS SGGGQRPYSL FNSFVDTIKS GKQDGDVTDV QYQSVDQQHE
1561 KMNSTGRRLS DMFSKIRRGT SADHNPHQNY SHRFGYSRNR GSRYDETEHL LAQDNRSPSS
1621 PRYRSMARAS PPSPAERYGH PPRYRTESPP SSRSEYQMSI RDPIIRRNRY NTMEHSRSSH
1681 DPQYHQDQQQ QQQPHHQQHS QHLQHSHHKT YQNHNQYSRS PIYSDDSSVA ESYRREREFR
1741 RYQDSTPQDV SEDDDPMPTA VRARRLPLIS TMPTHYESAY QPSSYNQHLN DSYGLGTGYQ
1801 RDYHTSHSHS HHPTSQQQQH QPMYSTSPLI SPRSSHSYYT PRSSQYYEIP SPSPDIYPSY
1861 RGSASPRRYP TSTVVVAPDR EGSSARVIQA QPGSIPLSDS ETEDDPRWAI V
//